| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_02380 |
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| Symbol | |
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| ID | 8631876 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sanguibacter keddieii DSM 10542 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013521 |
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| Strand | - |
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| Start bp | 257954 |
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| End bp | 259948 |
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| Gene Length | 1995 bp |
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| Protein Length | 664 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | |
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| Product | choline/carnitine/betaine transport |
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| Protein accession | YP_003313041 |
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| Protein GI | 269793586 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.136626 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTCAGT CACGGAAGAC CCCTGCGTCA CCGACAGACC CTGAGACACC GAAGACCGCC
GCCGACGAAC CCACCGGTGG CGCACCCGTC GGGCCGGCCA CGAGCGTGAA GCGGACCATC
CGCAGGCTCG CCCGCGACGA GTCCGTGCAC CCCGCGCTCA TCCCCGGCAT CGGGGTCGAG
GACACCGGCC GAGAGTTCCG GATCAACAAG CCCGTGCTGG CCGTCGCCGC CGCGCTCACC
CTCGCCGTGG TCGTCTGGGG GTTGACGAGC CCCGACTCCC TCGCGGAGAC CGGCAGCACC
GCCCTGGCCT GGGTCATGCA GAACTTCACG TGGCTGTTCG GCATCCTCGC GATCGTCATC
GCGCTCTTCA TGCTCGTGGT CGGTTACGGC CCGACCGCCG GCGTGCGCCT GGGCTCCGAC
GACGAGAAGC CCGAGTTCTC CCTGCCCAGC TGGATCGCGA TGCTCTTCTC CGCGGGCATC
GGCATCGGGC TGCTGTTCTA CGGTCCCTAC GAGCCGCTCG TGTACTTCCT CGAGCCGCCG
CACGGGTTCC TCGACGAGCC CGGCAGCCGG GACGCCATGC ACTCGGCGAT GGCGCAGACC
ATGCTCCACT ACGGCCCGAT CGCCTGGGCC ATGTACGCCC TGGTGGGTGG CGCGATCGCG
TACAGCTCGT ACCGCCGCGG GCGCCCGCCG CTGATCTCGG CGATCTTCGA GCCGATCTTC
GGCCCGGGCA AGAGGAACCC CCTCGGCGCG ACCATCGACG TCTTCGCGAT CATCGTGACC
CTCTTCGGCA CCGCCGTGTC CCTCGGGATC GGCGTGCTGC AGATCAGCCG CGGCTACGAG
ATCGTCAGCG GCGCCGGCCC GACGGGCAAC GCGTTCCTCG TGGCGCTCAT CGCGATCCTC
ACGTCGCTGT TCGTCATCTC GGCCGTCTCG GGCGTCAAGC GCGGCATCCG GACGCTGTCC
AACATCAACA TGGGCCTGGC CGGCGGGCTG GCGCTGTTCA TCTTCGTGGC CGGGCCGACC
ATCTTCCTGC TCAACCTGCT GCCGTCGGCC GGGGTCGCCT TCGTCGACGA GCTCGGCACG
ATGCTCACCC GCAACCCCGA CCACGGCCAG GAGGCCGCGG ACTTCCTCTC GGCGTGGACC
ACGTACTACT GGGCCTGGTG GGTGTCGTGG ACCCCGTTCG TCGGGCTGTT CGTCGCGCGC
ATCTCGCGCG GCCGCACCCT GCGCGAGTTC GTCACCGTCG TGATCATGGT CCCGTCGGCC
GTCTGCCTCG TGTGGTTCAC CGCCCTCGGC GGGACGTCCA TGTACATGGA GTCGCGCGGC
GACGGCATCA GCGAGGCCGG CAGCCCCGAG GCCATGCTCT TCGCGGTCCT CGACAACCTG
CCCTTCGGCG CCGTGACCTC GGTCGTGGCG ATGATCGCCA TCGTCATCTT CTTCGTCACC
TCGGCCGACT CCGCGTCGCT CGTCATGGCG TCGATGAGCG AGAACGGCAA GCCGCGCCCG
TCCGCGCGCG TCACCGTGAT GTGGGGCGTG TCCCTCGGTG CCGTCGCCTG CACCCTGCTG
CTCGCCGGGG GCGAGAACGC GCTGTCCGGG CTGCAGTCGA TCATGGTGGT CTCGGCGCTG
CCCTTCGCGG TGGTGCTCAT CGGCGTGATG ATCGCCTGGG CCAAGGACCT CCGCAACGAC
CCGTACATGC TGCGCAACAA GTACGCGAAG ACCGCGATCG ACCAGGGCGT GCGCCGCGGC
ATCGAGGACC ACGGCGACGA CTTCGTGTTC GGCTCGGACG AGGTCCCGGC CGCCGAGGGA
GCCGGCGCCT GGCTCGACAC CGACGACCCG TCCCTCACCG AGTGGTACAC GGACGCCCAG
GGCAACGGGT CGGCCACGGA CGAGGAGCCC GACGGTGCGC CTGCCCTCAC CGGCGAGACC
CCCGCGGTCG AGGCCATCGA GGCCGCACCC CGCCCCGACG AGATCGAGGC AGGCCCGGGC
ACGGGCAAGG GGTGA
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| Protein sequence | MRQSRKTPAS PTDPETPKTA ADEPTGGAPV GPATSVKRTI RRLARDESVH PALIPGIGVE
DTGREFRINK PVLAVAAALT LAVVVWGLTS PDSLAETGST ALAWVMQNFT WLFGILAIVI
ALFMLVVGYG PTAGVRLGSD DEKPEFSLPS WIAMLFSAGI GIGLLFYGPY EPLVYFLEPP
HGFLDEPGSR DAMHSAMAQT MLHYGPIAWA MYALVGGAIA YSSYRRGRPP LISAIFEPIF
GPGKRNPLGA TIDVFAIIVT LFGTAVSLGI GVLQISRGYE IVSGAGPTGN AFLVALIAIL
TSLFVISAVS GVKRGIRTLS NINMGLAGGL ALFIFVAGPT IFLLNLLPSA GVAFVDELGT
MLTRNPDHGQ EAADFLSAWT TYYWAWWVSW TPFVGLFVAR ISRGRTLREF VTVVIMVPSA
VCLVWFTALG GTSMYMESRG DGISEAGSPE AMLFAVLDNL PFGAVTSVVA MIAIVIFFVT
SADSASLVMA SMSENGKPRP SARVTVMWGV SLGAVACTLL LAGGENALSG LQSIMVVSAL
PFAVVLIGVM IAWAKDLRND PYMLRNKYAK TAIDQGVRRG IEDHGDDFVF GSDEVPAAEG
AGAWLDTDDP SLTEWYTDAQ GNGSATDEEP DGAPALTGET PAVEAIEAAP RPDEIEAGPG
TGKG
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