Gene Sterm_0439 details

Gene Information

• Locus tag: Sterm_0439
• ID: 8595930
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Sebaldella termitidis ATCC 33386
• Kingdom: Bacteria
• Replicon accession: NC_013517
• Strand: +
• Start bp: 486915
• End bp: 489020
• Gene Length: 2106 bp
• Protein Length: 701 aa
• Translation table: 11
• GC content: 35%
• Product: Hedgehog/intein hint domain protein
• Protein accession: YP_003307250
• Protein GI: 269119073

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.000848459
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGAGAAA TTAAATTTGA GGAAGTATTT GTATGTCATC AGGCTTATAT ATATTGTCCA 
TTTGGAGAAT TTATACAGCC GGTAGAAGCT ACTGTAAATG AGACAGCTAC TTTTCAGGGG 
AAAAGAGTAT TAACCAAAGA TGATGACGTG GTTGGCAGGA ATATTCATCC ATTTAAAAAA 
TGTGATAAAA AAGGTGAATG TCTGCTTTCA GGAACTGTTT CCTGGCAAAA AGCCAGAACA 
GATATAAAGG TAAACGGATC ACGGCTGCTG ACAGGGGAAT CATACTTTAT GTGTCCGCAT 
GTGAGAGGTA CAAAGATAGA ATTTAAAGAT GTAAAACAGG AACCGGGACC AGAAGTAGAC 
AAGAGAAGCA AGTTAGAGAT ATTTACTGAT GAAGCAAGCG GATTAATGAG TGCTCTTATG 
GGAATAAATG GAGTATTTCA AGCAACAGAA GGAGCAGTAC AGGTAAAAAA AAGGTATGAA 
AATATTTATA ATGCAACAGT TAAAGATGTA AAATATTTTT CAAAAGATAA TCTTAGGACT 
CTTGAAGAAA TATGGAGTTA TTCATTACCA GGTCAGTTCA CACATGGAGA TCCATATTCA 
AAAGATATGA AAAGCTATAT AAAGAATGAG GGGATATTTG CTTATGAAGA AGGAGAGGAG 
GGGTATTCGA GCGTAACAGG TAGCGTGCTG TCCTCAATGG CACTGGATGT TATACATCCT 
GCATACGGAG CAATGGAAGA TGCGTATGAT TTCAAGAATG CCTATAACGA CGGAGATAAA 
TTAGGTATGG CCCTTTCAGC AGTAGGTTTT ATTCCTGTAT TAGGTGCCGG AATAAAAAAA 
GGAACAGGTA AAGCAATGAA AATTGCCGGT GAATCAAAAA TGCTGAAAAA GGGCTCTAAA 
ATAGGAGATG CGATAGTAGA CAGCAAAGCT GTGAAACTAT TTCAAAATAC TTTATCTGGA 
AAAGTAAATA AAGTGGTACG GGGATTTGGC GATACTTTGA AAAGTATAAC GGAAGCCGGG 
TTAAATTTGA AAAAAAGGTT TGTGAGTTCT ACAAAAGCTC TTAACAGAAA AATAAATATG 
GCAATTTGTA ATTTGATCGA ATCTGGATGT TTTGTAGGCG GGACTTTAGT TAATACTGAA 
TATGGACTTA AGAAAATAGA AAATATTAAA ATTGGGGAGA AAGTTTACAC TTATGATTTA 
GTTAACAGAG AAGTAATTTT GAAAGAAGTA ACAGAGACTT TTAATGAAAG AGTCAGTAAA 
ATAATTAAAA TAGAAATAGA AAATAATGTT ATAATTGAAA CAACTGTCGA GCATCCTTTT 
TATGTGAAGG ATATAGGATG GGTGGAAGCT GGAAAACTGA AGGAAGGTGA TAAATTATTT 
TCCAGGGAAC TGGGAGATAC TGAAATAGCA GCAGTTCGGG AAGATATATA TTTAGACAGG 
GATGTATATA ACTTACAATT AGAGGGGAAT CATAATTTTT TTGTTTCTGA GTTGGAGCTG 
TTGGTGCATA ACGATACAGC TTGTGCGGAG TTGCTTAAAA AGCTGGATGA TGATATAGCT 
AAATTGATTA AAGAAGGGGC TTCTGAGGAT GTTATAAATA GTTTAAGAAA ACAGAGAAAG 
CATATTATAG AAAAAAATCT TAATGAATTT CTAAATGGTA CTAAAAAATT TGATGATGTG 
CTTGATGATT ATGCAAGATT ATATGCTGAT GTTGTTGATT CTAATGAAAT ATGGCGTTGG 
GAACGAGATA TGATAGGTGG ATCAGAACTA ACTGCAAGAC AAAGAAAGGC AATTAGAACA 
AAGGCATTTG ATGACGGTTT ATTACCAATT GTAGAGTTTA AAGCAGGTAC GAAGTATCCA 
GACTTTGAAA AAGCTGGTTT AATAATTAAA GAAGATATGT TACCAGAAGA GTTGTGGAAA 
GCATCAGATA GACGTCAATT TGATTGGTTA GACAATAGAT TAGTGGATGG GCGTCCTCGA 
GGAACTACTT GGAATCATTC AGATATAGCA GGTAGAATGG AATTGGTTCC ATTTGGTATT 
CATAATGTAA TAAATCATAG AGGTGGAAGA AGTCCTGGAC AATGGGCTTA TGTTTTAAGA 
AGATAG 

 

Protein sequence

MGEIKFEEVF VCHQAYIYCP FGEFIQPVEA TVNETATFQG KRVLTKDDDV VGRNIHPFKK 
CDKKGECLLS GTVSWQKART DIKVNGSRLL TGESYFMCPH VRGTKIEFKD VKQEPGPEVD 
KRSKLEIFTD EASGLMSALM GINGVFQATE GAVQVKKRYE NIYNATVKDV KYFSKDNLRT 
LEEIWSYSLP GQFTHGDPYS KDMKSYIKNE GIFAYEEGEE GYSSVTGSVL SSMALDVIHP 
AYGAMEDAYD FKNAYNDGDK LGMALSAVGF IPVLGAGIKK GTGKAMKIAG ESKMLKKGSK 
IGDAIVDSKA VKLFQNTLSG KVNKVVRGFG DTLKSITEAG LNLKKRFVSS TKALNRKINM 
AICNLIESGC FVGGTLVNTE YGLKKIENIK IGEKVYTYDL VNREVILKEV TETFNERVSK 
IIKIEIENNV IIETTVEHPF YVKDIGWVEA GKLKEGDKLF SRELGDTEIA AVREDIYLDR 
DVYNLQLEGN HNFFVSELEL LVHNDTACAE LLKKLDDDIA KLIKEGASED VINSLRKQRK 
HIIEKNLNEF LNGTKKFDDV LDDYARLYAD VVDSNEIWRW ERDMIGGSEL TARQRKAIRT 
KAFDDGLLPI VEFKAGTKYP DFEKAGLIIK EDMLPEELWK ASDRRQFDWL DNRLVDGRPR 
GTTWNHSDIA GRMELVPFGI HNVINHRGGR SPGQWAYVLR R