| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmar_2162 |
|---|
| Symbol | |
|---|
| ID | 8568824 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodothermus marinus DSM 4252 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013501 |
|---|
| Strand | + |
|---|
| Start bp | 2515906 |
|---|
| End bp | 2517636 |
|---|
| Gene Length | 1731 bp |
|---|
| Protein Length | 576 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | |
|---|
| Product | NADH dehydrogenase |
|---|
| Protein accession | YP_003291429 |
|---|
| Protein GI | 268317710 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCGGA TTACCATAGA CGGCACGGTT TACGAATTCG AAGGGCGGCC TAAGCTGTTG
CAGTTCTTCC TCGATCACGG CATCGAGCTG CCCCACTTCT GCTACCACCC GGCGCTATCG
ATCCCGGCCA ACTGTCGCCA GTGCCTGGTG GAGGTGGGCA TGCCGGTCAT CGACCGGGAG
ACCGGCAAAC CGAAGCTCGA CGAAAACGGC CAGCCCGTCA TCCAGTTCAT GCCCAAGCTC
CAGACGAGCT GCTCGCTCGA CATGGCCGAC GGGATGGTCG TCAAAACGCA TCGCACCAGC
GAGAAGGTGG CGCGCGCTCA GCGCGACACC CTGGAATTTC TGCTGATCAA CCACCCGCTC
GACTGCCCGA TCTGCGATCA GGCTGGCAAA TGTCCGCTCC AGATTCAGGC CTACAAGTAC
GGGCCTGAAG GCTCCCGCTT CGAGTTTCTC AAGGTGCACA AGCCCAAGCG GGTAAAGCTG
GGCCCCCGCG TCATGCTCGA CGCCGAGCGG TGCATCAACT GCACGCGCTG CGTGCGTTTC
ACCGATGAGA TTTCCAAGAG CCACCAGCTC ACCATCATCG AGCGCGGGGT CAGGAACTAT
CCGATCACGC CGCCCGGCGT GGAGTTCGAT GATCCCTACT CCATGAACGT GATCGACCTG
TGCCCGGTGG GCGCGCTGAC GTCCATCGAC GCCCGCTTCA AGGCGCGCCC CTGGGAGATG
AGCGCCACGC CCTCGATCAC GATCACCAAC GCGAAGGGCT CCAACTGCTA CTACTGGGTG
CGCGACAACC TGATCGTCGA GATCACGGCG CGCGCCAATG CGGCCGTCAA CGGCTACTGG
CTGCCCGACG AAGACCGGCT CGACTACCAT CGCTTCAACG AAAACCGCCC GGACGGCCCC
GAGGTGCGTC GCGACGGTCG GCTCGTGCGC GTGAGCTGGG AAGAAGCCTA CGACCGGGCG
GCCGAGCTGC TTGCGGGCAT CGACGGCCGT CGCATCCTGT TCCTGGGCTC GGCCTACGCG
ACCGTCGAGG ACAACTACCT GCTCAAGCGG CTGGCCGAGG CGCTGGGCGC CGACACGCCC
GTTTACATTC CCCACATCGA GCCCGGCCAC GGCGACGGCT GGCTCCGCAC CGACGACCGC
ACCCCCAACG CCCAGGGTTG CCAGCGTCTG GGCATCCTGC CCGTCGACGA AGCCCTTGTG
CGGAGCCGCC TCGAAAGCGG CGACATCCAG GCGGTGTACG TGCTCGAAGA CGACCCGGTC
GGCTCCGGGC TCTTCACGGC CGAGGCGCTG GCCGACATTC CCGTCATCCT GCATTATTAC
AACACGACCA ACCAGACGCT GGCCGTGGCC GACGTGGCGC TCCCGGCCGC CACGGTGGTC
GAGACCGTCG GGACCTACGT CAACTGCGAC GGGCATGCCC AGCGCGTGCG CCCGGCCAAA
GCCATCCGCA CAGTCAACCG CGTGTTGATG CAGGAAATCG GCAAAAGCCG CCTGGACCAG
CACGGTACGC CTTACGACCG CTGGTACAAC GAAAAGCACC AGGTGGACTG CAAGCCGAGC
TGGGAAATCC TGCCCGAGGT GGCCGAACGG CTGGGCCATC CGCTCCGCTA CAAGGGGCCG
AAGTACATCA TGCAGGAGAT CGCCGAGACG ATCCCGGCTT TCGCTGGCGC CACCTACGAG
GCGATGGGCC TGGAGGGCGT CCGCCTTGCC GAGATCGGCG CCGAGGTGTA G
|
|---|
| Protein sequence | MPRITIDGTV YEFEGRPKLL QFFLDHGIEL PHFCYHPALS IPANCRQCLV EVGMPVIDRE
TGKPKLDENG QPVIQFMPKL QTSCSLDMAD GMVVKTHRTS EKVARAQRDT LEFLLINHPL
DCPICDQAGK CPLQIQAYKY GPEGSRFEFL KVHKPKRVKL GPRVMLDAER CINCTRCVRF
TDEISKSHQL TIIERGVRNY PITPPGVEFD DPYSMNVIDL CPVGALTSID ARFKARPWEM
SATPSITITN AKGSNCYYWV RDNLIVEITA RANAAVNGYW LPDEDRLDYH RFNENRPDGP
EVRRDGRLVR VSWEEAYDRA AELLAGIDGR RILFLGSAYA TVEDNYLLKR LAEALGADTP
VYIPHIEPGH GDGWLRTDDR TPNAQGCQRL GILPVDEALV RSRLESGDIQ AVYVLEDDPV
GSGLFTAEAL ADIPVILHYY NTTNQTLAVA DVALPAATVV ETVGTYVNCD GHAQRVRPAK
AIRTVNRVLM QEIGKSRLDQ HGTPYDRWYN EKHQVDCKPS WEILPEVAER LGHPLRYKGP
KYIMQEIAET IPAFAGATYE AMGLEGVRLA EIGAEV
|
|---|
| |