| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmar_2033 |
|---|
| Symbol | |
|---|
| ID | 8568690 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodothermus marinus DSM 4252 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013501 |
|---|
| Strand | - |
|---|
| Start bp | 2365448 |
|---|
| End bp | 2367334 |
|---|
| Gene Length | 1887 bp |
|---|
| Protein Length | 628 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_003291302 |
|---|
| Protein GI | 268317583 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGAGA ATCGGCCCCA TTCCGAACCG TTGCCTTTCG TGGAGCCGTC AGCCGCGGGC
GATGACGTCA ACGAAGCAGA ATTTTCGCTG ACCGATCTGA GCGATCCGGT CATTATCATG
CTCCTGTTTC AGGAGCTGGT CCGTGAAGAG CAGGTGCGGA AGGCCTGGGA AAAGTGGCGT
CAGCTCGACA GAGACCGGCG GCGGCCGCTC TGGCGCGTCC TTACCGAGAT CGACGGCATC
AATCCCGAGG TCGTCTATGC GACGGCCGCC GAAGTGTACG GCTTCAAGAC GGCCCGTATC
GATCGGGCTC AGGTGTTGCG TTTCCTCCGG GATCAGCGCC AGCGCTTCAC GCAGGAACAA
TGGAGCTGGA TGCAGCGGGA GCGGGTGTTG CCGATCGGGC AGGAGGTGGA TGCCGAGCGC
GACGTGATGC GCTGGCTGCT GGCCACGCAC GATCCGACCC GTCCCAACCT GCACCGTCAG
ATCGCCCGGC TCGGGATCGA TCGCTTCGAG TTGCGCTATG CGCCGGCTTC GACGATTGAG
CAGATCTTTC AGGAGGCGTT CCCCCGCCGC AATGAATACC TGGAGCGTGT GCAGCAGGAA
GACGGGGCGG TCGATCTCGG AATGAGCTAT GAGGAAAATA CCGAGCTGAT CGACGAGGAG
TCGCTGGAGG CTGAAATTAA CCGCTCCAAG CTGATCAACC TTTTCGAAGC GACGCTCGTC
GAAGCCGTCC GCCAGGGCGC CTCCGACATC CACATCTTCC CGAACCACGA CCGCAAGGTC
GAAATTCACT TCCGGATCGA CGGCGAACTG CACCGCTGGC ACCTGGAGGA CAAGGTGCAT
CCCGAAGCGT TTCTGGCCGT GGTGAAGGAC CAGGCGGGTG GGGTGGACCG CTTCGAGCGG
GAAAAAGCGC AGGACGGTTT CATCCAGCGC TGGATCGACG ACCACCTCAT CCGCTTCCGC
GTCTCCGTGC TCCCGATCGC CACGGCCAGC TTCGATGTGC GCGCCGAGTC GATCGTCATC
CGCGTGCTCG ACGACCGCAA GGTCATCAAA GACCTGCGGC TGCTGGGGCT TTCCGAGCGG
GCGCTGGAGC GCTTCGAGTG GGCGATCCGC CAGCCCTACG GCATGGTGAT CGTCACCGGT
CCCACCGGAA GCGGTAAAAG CACCACGCTC TACGCCGCCC TCCACCAGGT CGTCAGCCCG
CGCAAAAACG TGCTGACCGT CGAAGATCCG GTCGAGTACA TCATCCCCGG CGTGCGCCAG
ATCAAGCTCA GCCACAAGCT GGGGCTGGAG GACGCGCTGC GGGCCATCCT GCGACACGAC
CCCGACATCG TGATGGTGGG CGAGATGCGC GACCGCCAGA CGGCCGAGCT GGCCATCAAG
CTGGCCAACA CGGGGCACCT GACGTTTTCG ACGCTGCACA CGAACGACGC ACCCAGTGCG
GTGAGCCGGC TCTACAAGAT GGGGATCGAG CCGTTTCTGA TCGCCTACGC GATCAACCTG
GTCGTGGCCC AGCGCCTGAT CCGGAAGCTC TGTCCGAAGT GCCGGGTGCC GGACCCGGAT
CCCGATCCGG TGCTGCTGAT GCGGCTCGGC TTTACGGAAG AACAGATCGC CCGCACCACG
TTCTACAGAG CCGGCCAGAA TCCGCGCTGT CCGGTCTGCA AGGGGGTCGG CTACAAGGGG
CGGCGGGCGA TCACCGAGAC GCTCTGGTTC TCCCGCGCCA TTCGCCACAT GATCGTGGCC
GCCCGCGACG CGATCGACGA AGACGCGCTA CGCGCGCAGG CGATTAAAGA AGGCATGCAG
ACGCTGCAGG AAGCCGCCCG CGAGGTCGTG CTGGCCGGCG AAACCACCAT CGAAGAAATG
CTGGCCACCG TGGCCTTCGA GGGTTGA
|
|---|
| Protein sequence | MSENRPHSEP LPFVEPSAAG DDVNEAEFSL TDLSDPVIIM LLFQELVREE QVRKAWEKWR
QLDRDRRRPL WRVLTEIDGI NPEVVYATAA EVYGFKTARI DRAQVLRFLR DQRQRFTQEQ
WSWMQRERVL PIGQEVDAER DVMRWLLATH DPTRPNLHRQ IARLGIDRFE LRYAPASTIE
QIFQEAFPRR NEYLERVQQE DGAVDLGMSY EENTELIDEE SLEAEINRSK LINLFEATLV
EAVRQGASDI HIFPNHDRKV EIHFRIDGEL HRWHLEDKVH PEAFLAVVKD QAGGVDRFER
EKAQDGFIQR WIDDHLIRFR VSVLPIATAS FDVRAESIVI RVLDDRKVIK DLRLLGLSER
ALERFEWAIR QPYGMVIVTG PTGSGKSTTL YAALHQVVSP RKNVLTVEDP VEYIIPGVRQ
IKLSHKLGLE DALRAILRHD PDIVMVGEMR DRQTAELAIK LANTGHLTFS TLHTNDAPSA
VSRLYKMGIE PFLIAYAINL VVAQRLIRKL CPKCRVPDPD PDPVLLMRLG FTEEQIARTT
FYRAGQNPRC PVCKGVGYKG RRAITETLWF SRAIRHMIVA ARDAIDEDAL RAQAIKEGMQ
TLQEAAREVV LAGETTIEEM LATVAFEG
|
|---|
| |