Gene Rmar_0559 details

Gene Information

• Locus tag: Rmar_0559
• ID: 8567193
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodothermus marinus DSM 4252
• Kingdom: Bacteria
• Replicon accession: NC_013501
• Strand: +
• Start bp: 631636
• End bp: 635016
• Gene Length: 3381 bp
• Protein Length: 1126 aa
• Translation table: 11
• GC content: 67%
• Product: type II secretion system protein E
• Protein accession: YP_003289847
• Protein GI: 268316128

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCTGGA GTGATCTGTT CGGGCGCCGT CGTTCGCCTC GTGAATGGAA CGAAGAGCTG 
CGGCGGCTGA AGTTCGGAAC AAAGCAAGAG GAATCCGGCA AGGACGACGG GACCGACGCC 
GCCGGGAAAG CCTACCCGGA GGATGCCTCG GACCGGCCCG AGCCGAAGCC GGCTGAAGCG 
CAGCCGCTAT CGGGGCTCTG GCTGGAACTG GCCGGGGATG GGCATGCCGA GGACGCGCTG 
CCGGAATTGC CGGAGACCCC CGAGCCGGAG GAAGCCGAGG CCGAAACCGC GGAGGCCGAG 
CCTTCGGATC GGGCCGCTGC GCTGACGGAC GTGTCCGCCG AAGTGGCGTC GGCCCGGCCG 
CAGGCGAGTC TGGCCGATGC CACGCCGGGA CGCGAGGGGG CGCGGCAGGA GCCGCCTCGT 
CCGAAGCAGG AACCCACCGC TGAGCCGCCG GGTGCTTCGG TCGATCGGGG CGGCGTGCCG 
CCGACCGCCC GCGATTCGCG GACCGCTTCG CTGCCGGAGG GCGCCTTCAT GCCCGAACTG 
GCCGAGATGT TCGAAGACGA CGTCGTGATG GCGCTGCTCT ACGGCGGGGC GGTACGGCTG 
GATCAGATCG CGCGGGCCAT CGTGCTGCGG CGGCGTCGGC CGGAGCAACG GCTCTGGCGT 
TGCCTGCTGG AAGTGCCCGG TGTCGATCGG GAGACTGTAC TGGCCGAAGC GGCCCGTGTG 
GGTGGCATCG CACCGGCCCC GGTCGACGAA GAACGCCCCT CGGTCGAATT CATCAAGGCC 
ATTCTGTTGC TCCTGCCGCC TTCGGTGCAG CACATGCTGT TCGACTGGCA GCTGCTGCCC 
TGCGGATTCG CCCAGGGAAA AGAGGGGGGG CGCGTGCTGC TGCTGGCCAC GCACGACCCG 
ACGCGGCCGG AATTGAAGCA GGTGCTTCAG GAACTGCGGC TTCCCGCAGA ACTCCGGTAT 
GCGCCCGAGC GCATTCTGAC GAAGCGGCTG GCCGAATTGG AGAGCTTCCG ACCGCCTGTG 
CTCGAGCCCG AGCCGCCAAC CCCCGAAGCG CAACCACAGG TTCAGGCTCC GGAGCCTGAG 
ATCGATAGAA CGCCCGCGCA GCCAGAACCT GAGCCGCCGG AACCTGTCGC CGAAACGCCG 
ACGCCGGAGG CGGCCGATCC GGATGCGGTC CGGAAAGCAG CGCTCCCGGA GTCCCCGGAA 
GACGACGAGC CGGACGGGGG CGTCGGCCTG CAGGAAGCCG GAACGGCCGA GGTGTCCGAA 
CCGGCCGCGC CGGAAATCCA GCCTGCGGAA GAGGTACCGG CCACCTTCGC CCGGGAAGCT 
CCGCCGGTCG CCGATTCCCC GGCTGAACCG TTGTTCGAGC CGCTGCAGGG TGAGGCCCTG 
GAAGAACCGA AGGCGGAAAC CACGCCCGAG GCTCAGGCCG AAGCGGCGCT CGAAACCGCG 
CCGGAAGTCG CCGTGGAAAC GCTGGATGCC GCCTCCGACG CGATCGGCGA CGAAAAGCAG 
GAAGCCGACG CCCCGGAAGC GGCGGACGAT GGCGAGGACG TCCCGCCGCC GGTCAAGATC 
GTACTGGACG ACCTGCCTGA GCTGAAGGCC GCCATCGCAC GCGACCGGGT GGTGAGTCGG 
CTGCTTGAAA AAGACGTGGT GGCGCTGCAT CAGGTCTATC AGGCCTATCA GCGGCAACAG 
GACGAAGGGC TCAAGGAACC GCTCTGGCGC GTGCTGGCGC AGAGCGACCA CGTGCCGCAG 
GACGCCATCT ACGAAGAGGC CGCCCGGCTG TATGCCTTTC CCATTGCCAG GCTGGAGCCG 
GGCAAGCCCA GCCCGGAATT CGTGCGCTCG GTGATGGACA CCTTCGAAGA GGAGGTACGC 
GAGCGCCTGA TCGAGCTGCG CGTGGTGCCT TTCGAGGTCG ATCTGGATGC CCAGACCGGC 
GCTGTCAAGC TCGTGCTGGT CACGCACGAT CCCATGCGGC CCGAGGTGCA CCGCCTGGTG 
CACCGGCTCA AGCTGGAGCG CTTCGAACTC CAGTATGCGC CCCGGGGCGT GATCATGCAG 
GCGCTGATGG AGGCCTACCC GCGTCGCAAC GAATACCTGG AGCGCGTCAA AGAAGAAGCC 
GCCTACGATC TGGGCACGAG CTACGACGCC CAGACCGAGC TGATCGACGA AGACGCGCTG 
GAGGCCGAGA TCAACCGCTC CAAGCTGATC AACCTCTTCG AAGCGACGCT CGTCGAAGCC 
GTCCGCCAGG GGGCCTCCGA CATCCACATC TTCCCGAACA ATCAGAAGAA AGTAGAAATC 
CATTTCCGCA TCGATGGTCG GCTCACGCGC TGGCACGTGG AGGACAAAGT GCATCCCGAA 
GCGTTCATCG CGGTCATCAA GGACCAGTCG ATGAACGTGG ACCGCTTCGA GCGCGATGCG 
GCGCAGGATG GCTTCATCCA GCGCTGGATC GACGACCACC TCATCCGCTT CCGCGTCTCC 
GTACTCCCCA TCGCCAACGC GCTCGAAGAC CTGCGCTCGG AGTCGATCGT CATCCGTGTG 
CTCGACGACC GCAAGGTCAT CAAAGATCTG CGGCTGCTCG GGCTCAACAA GAAGGCGCTG 
GAGCGCTTCG AGCGGGCCAT TCGCCAGCCG CACGGCATGG TGATCGTCAC CGGGCCCACC 
GGCAGCGGTA AAAGCACCAC GCTCTACGCC GCCCTCCACC AGGTCGTCAG CCCCGAGGTG 
AACGTGCTGA CGATCGAGGA TCCGGTCGAG TACATCATCC CCGGCGTGCG CCAGATCAAG 
CTCAACCACA AGCTGGGGCT GGAGGAGGCG CTGCGGGCCA TCCTGCGGCA CGACCCCGAC 
ATCGTGATGG TCGGTGAGAT GCGCGATCGC CAGACGGCCG AGCTGGCCAT CAAGCTGGCC 
AACACGGGGC ACCTGACGTT TTCGACGCTG CACACGAACG ACGCCCCCAG TGCGGTGAGC 
CGGCTCTACA AGATGGGGAT CGAGCCGTTC CTGATCGCCT ATGCGATCAA CCTGGTCGTG 
GCCCAGCGCC TGATCCGCAA GGTGTGTCCG GCCTGCAAGG TGGAAGACAA AGACCCCGAC 
TACGTGATGC TCCGCAAACT GGGCTTCACG GACGAGGAGA TCGCGCGCAC CACCTTCTAC 
AAGGCCGGTC GCGACCGTAA CTGCAAGGTC TGCAAGGGCG TCGGCTACAA GGGCCGGCGG 
GCGATCGTCG AGGCTATGTA CTTCTCGCGG ACGATCCGAC ACATGATCGT CGAAGCGCAG 
GGATCCATCG ACGAAGACGC GCTGCGTGAG CAGGCGATCA AAGAGGGCAT GCAGACGCTG 
CGCGACGCCG CCCGCGAGGT CGTGCTGGCC GGCGAAACCA CCATTGAGGA GATGATCCGG 
GTGACGACGA CCGAGGAGTA G 

 

Protein sequence

MSWSDLFGRR RSPREWNEEL RRLKFGTKQE ESGKDDGTDA AGKAYPEDAS DRPEPKPAEA 
QPLSGLWLEL AGDGHAEDAL PELPETPEPE EAEAETAEAE PSDRAAALTD VSAEVASARP 
QASLADATPG REGARQEPPR PKQEPTAEPP GASVDRGGVP PTARDSRTAS LPEGAFMPEL 
AEMFEDDVVM ALLYGGAVRL DQIARAIVLR RRRPEQRLWR CLLEVPGVDR ETVLAEAARV 
GGIAPAPVDE ERPSVEFIKA ILLLLPPSVQ HMLFDWQLLP CGFAQGKEGG RVLLLATHDP 
TRPELKQVLQ ELRLPAELRY APERILTKRL AELESFRPPV LEPEPPTPEA QPQVQAPEPE 
IDRTPAQPEP EPPEPVAETP TPEAADPDAV RKAALPESPE DDEPDGGVGL QEAGTAEVSE 
PAAPEIQPAE EVPATFAREA PPVADSPAEP LFEPLQGEAL EEPKAETTPE AQAEAALETA 
PEVAVETLDA ASDAIGDEKQ EADAPEAADD GEDVPPPVKI VLDDLPELKA AIARDRVVSR 
LLEKDVVALH QVYQAYQRQQ DEGLKEPLWR VLAQSDHVPQ DAIYEEAARL YAFPIARLEP 
GKPSPEFVRS VMDTFEEEVR ERLIELRVVP FEVDLDAQTG AVKLVLVTHD PMRPEVHRLV 
HRLKLERFEL QYAPRGVIMQ ALMEAYPRRN EYLERVKEEA AYDLGTSYDA QTELIDEDAL 
EAEINRSKLI NLFEATLVEA VRQGASDIHI FPNNQKKVEI HFRIDGRLTR WHVEDKVHPE 
AFIAVIKDQS MNVDRFERDA AQDGFIQRWI DDHLIRFRVS VLPIANALED LRSESIVIRV 
LDDRKVIKDL RLLGLNKKAL ERFERAIRQP HGMVIVTGPT GSGKSTTLYA ALHQVVSPEV 
NVLTIEDPVE YIIPGVRQIK LNHKLGLEEA LRAILRHDPD IVMVGEMRDR QTAELAIKLA 
NTGHLTFSTL HTNDAPSAVS RLYKMGIEPF LIAYAINLVV AQRLIRKVCP ACKVEDKDPD 
YVMLRKLGFT DEEIARTTFY KAGRDRNCKV CKGVGYKGRR AIVEAMYFSR TIRHMIVEAQ 
GSIDEDALRE QAIKEGMQTL RDAAREVVLA GETTIEEMIR VTTTEE