| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_001268 |
|---|
| Symbol | |
|---|
| ID | 8559580 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013457 |
|---|
| Strand | - |
|---|
| Start bp | 1441463 |
|---|
| End bp | 1443262 |
|---|
| Gene Length | 1800 bp |
|---|
| Protein Length | 599 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 646408937 |
|---|
| Product | TPR domain protein in aerotolerance operon |
|---|
| Protein accession | YP_003288416 |
|---|
| Protein GI | 262396563 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3064] Membrane protein involved in colicin uptake |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGAGT TTATTTTCCT TAACCCTTCT TGGCTTTTGG GGCTTATCGC AATCCCTATT
GCGCTCTTGC TCAATCACAA ATTTAGAGCA AAAAAATCGA CACTGATTGC CCCTCACCTA
GCTAAAGTGC TCGGACAAAA CACGCAGTCC AAACACTATT TTATTCTCTG GGGCGTAGCT
TGGGCGCTTG CCTGCATTGC GCTAGCGGGA CCAAGCTGGC AATCCAACGC TCGCCCAAGC
TTTGAGTTAA ACCAAAACCG CATTTTAGTG CTTGATATGT CTCGCTCGAT GTTCGCTACG
GACATCAAGC CTAATCGACT CGCGCAAACA CGTTATAAGG CGCTGGACTT ACTTCCTAAA
TGGAAAGAAG GGGCTACAGG TCTTATTGCT TACGCTGGCG ATGCCTATAA CTTAAGTCCA
CTGACGACTG ATTCCAGTAC GCTTGCCGGC ATTATCGAGA ATTTGTCACC AGAGCTAATG
CCTTTTCAAG GGGCAAACCT GCCTTCCGCA ATTGAATTAG CGCTCAACCA GTTCTCTCAA
GCAGGTGTGC AACAAGGCGA CATCATCGTG TTAGCTGATG ACCTTGATGA GTCAGAACTG
TCTCGCGCGT TGAATTTAGT CGAAGGTAAA AACATTCGGA TCTCTGTTCT TGCAGTAGGA
ACCGCTAATG GTGCTCCCAT TGCCCTACCC GATGGTTCTC TTTTAAAGAC TGCACAAGGC
ACAACTGTCG TAGCGAAAAC AAATCTGAAG AATTTACAAA TACTAGCAAA GAAAACAGGT
GGAATTTTTG TTCCTATTCA GCACACCTAT CGCGATGTTG AGAGAATTTC GGCCTTTACG
AGCAACGTTG GCAGTCAACT TTCGGCCAAG AAGAGTGAAG AAGTGAGCAC TGACTCTCGC
TTAAACGGTG GCTTTTGGTT GCTGCCGCTG TTACTTCTGC CTGCAGCTTT ACTGTTCCGA
CGCGGCCTGA TTTGGATGTT TGTGGCAACA ATAATACCGA TGACTTGGAC ACAACACGCC
GAAGCAAATC CGTTCTTAAA TGCCGACCAA CGAGGAGCGG AACTCTACAA GCAAGGTGAG
TATGAACAGG CGCAAAACCT ATTTACAAAC CCAAGCTGGA AAGGAGCCGC CAGTTACCAA
AAAGGTGACT ACGAAGCCGC TATCGAAGCA TTTTCTCATG ACTCCTCTCC TAACGGCCGC
TATAACCTTG CCAACTCTCT GGCGCAAAAT GGTCAATTAG AAGAAGCAGC AGAGCTTTAT
AAAAAACTGC TTGAAGAAAC GCCCAACTTT GAAGCTGCAA AGAAAAACTT GTCGGTTGTG
GAACAGAAGC TGAAACAGCA ACAGCAACAG CAACAGCAAC AGCAACAGCA ACAGCAACAG
CAACAGCAAC AGCAACAGCA ACAGCAACAG CAACAGCAAC AGCAACAGCA ACAGCAACAG
CAACAGCAAC AGCAACAGCA ACAGCAACAG CAACAGCAAC AGCAACAGCA ACAAAAGTCT
CAAAACGGTG AAAGGGAAGA GCAAGGACAA CAGTCACAAA ATCAGCAAGA ATCTGAAAAT
AAAACAGAAA AGCAAAAAAC AGAGCAACAT CGACCGAAAC GAGGTGAAAA GCAGGCTCAT
GAACAAGGTG AACCAATGCA GGCTCAAGTG CAGCCAAAAA ACACGCATCG GGATGATCCT
GAATTCCGTC GTCTAGAAGC AGTCGAAAGC GCTCGCGATC CAAGCTTTTT GATTCGTGCA
CAAATGCAGC TTCAAGCTCA ACAAAAACAA CCTCCACAAC AATCTCAAAA GGAGTGGTAA
|
|---|
| Protein sequence | MAEFIFLNPS WLLGLIAIPI ALLLNHKFRA KKSTLIAPHL AKVLGQNTQS KHYFILWGVA
WALACIALAG PSWQSNARPS FELNQNRILV LDMSRSMFAT DIKPNRLAQT RYKALDLLPK
WKEGATGLIA YAGDAYNLSP LTTDSSTLAG IIENLSPELM PFQGANLPSA IELALNQFSQ
AGVQQGDIIV LADDLDESEL SRALNLVEGK NIRISVLAVG TANGAPIALP DGSLLKTAQG
TTVVAKTNLK NLQILAKKTG GIFVPIQHTY RDVERISAFT SNVGSQLSAK KSEEVSTDSR
LNGGFWLLPL LLLPAALLFR RGLIWMFVAT IIPMTWTQHA EANPFLNADQ RGAELYKQGE
YEQAQNLFTN PSWKGAASYQ KGDYEAAIEA FSHDSSPNGR YNLANSLAQN GQLEEAAELY
KKLLEETPNF EAAKKNLSVV EQKLKQQQQQ QQQQQQQQQQ QQQQQQQQQQ QQQQQQQQQQ
QQQQQQQQQQ QQQQQQQQKS QNGEREEQGQ QSQNQQESEN KTEKQKTEQH RPKRGEKQAH
EQGEPMQAQV QPKNTHRDDP EFRRLEAVES ARDPSFLIRA QMQLQAQQKQ PPQQSQKEW
|
|---|
| |