Gene VEA_001039 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVEA_001039 
Symbol 
ID8559352 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio sp. Ex25 
KingdomBacteria 
Replicon accessionNC_013457 
Strand- 
Start bp1176845 
End bp1177531 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content46% 
IMG OID646408710 
Producttranscriptional regulator 
Protein accessionYP_003288189 
Protein GI262396336 
COG category[K] Transcription 
COG ID[COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGTAAAA ATGGATTAAA GAATGCACTA CAACTATTGA TAGCGACCTT AGTCCTATTC 
TTTGGGATGC TTCAAACGGC ACATGCGGCG GATAAACGCA TTGGCATTCT GGTTTACGAC 
GGCGTACTGA CCTCTGATGT CACTGCGCCT TTAGAGGTCT TTGGCGTTGC AAGTCGTCTG 
ACTTGGTTTA GCGATTATGA AGTAGTCACT ATTTCCGTCT CTGATCAGAA AACCATTACC 
ACTGAAGAGG GATTAAAAAT TGGTGTGGAT GCTTGGATTG GCGATCAGCC GGAGCTCGAC 
GTGCTGGTTT TAACATCCAG CTACGACATG GATGCGCTAA TCGAAAACAA GGATCTCATT 
CACTTTATTC AAACCACATC AAAGGCGGCA GATTGGATGG CAAGTAATTG CTCTGGTGCG 
TATCTATTGG CCGAGGCTGG CCTTTTAAAC GGTAAGAAAG CGACGACATG GGCAGGAGGT 
GAAAACGGAT TACAAAAAGA CTATCCAGCA GTTGATGTAC AGGTCGACCA GAATTTTGTT 
GTTGATGAGG GCGTCATCAC CTCAAACGGC AGCCTAGTTA GCTATCAAGC CGCCCTTAAA 
TTGCTGCATC TCATGACTTC AGAATCTAAA GCTCAAGAAG TCGCAGACGC CCTTCAATAC 
TCACGTTTTT CTACCCAGCC ATTTTAA
 
Protein sequence
MGKNGLKNAL QLLIATLVLF FGMLQTAHAA DKRIGILVYD GVLTSDVTAP LEVFGVASRL 
TWFSDYEVVT ISVSDQKTIT TEEGLKIGVD AWIGDQPELD VLVLTSSYDM DALIENKDLI 
HFIQTTSKAA DWMASNCSGA YLLAEAGLLN GKKATTWAGG ENGLQKDYPA VDVQVDQNFV 
VDEGVITSNG SLVSYQAALK LLHLMTSESK AQEVADALQY SRFSTQPF