| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_004315 |
|---|
| Symbol | |
|---|
| ID | 8558076 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | - |
|---|
| Start bp | 2998823 |
|---|
| End bp | 2999386 |
|---|
| Gene Length | 564 bp |
|---|
| Protein Length | 187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 646407437 |
|---|
| Product | outer membrane protein A precursor |
|---|
| Protein accession | YP_003286938 |
|---|
| Protein GI | 262395084 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3637] Opacity protein and related surface antigens |
|---|
| TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGCA ATGTTGTTAC TTTGATTGGC CTTTTTTCTT TAGCAACGTT TAGTACTTTA
TCTCACGCAG CGGACTCCAA AGATCATGGT GTTTATGTCG GCGCCAACTA TGGTTACTTA
AAAGTTGATG GACAAGATGA CTTTGATGAT GACAGCGATG CTATTCAAGG TTTGGTTGGT
TACCGTTTTA ACCCTTACTT AGCGTTAGAG GGCGGTTACA TTGATTTTGG TAGCTATGGT
AATAACCTAG CAAATGCCGA AACGGACGGT TACACCGCAG CACTAAAAGT TACAGCCCCT
ATTGCTGATC GTGTCGATCT TTACGCAAAA GGTGGTCAAA TGTGGTACTC GACGGATTAC
AACGTTGCGG GCTTCCAAGG CAACAAAGAT GACGAAGGTG TATTCGCTGG TGCCGGTGTT
GGTTTTAAAG TTACTGATAA CTTCTTAGTT AACGCAGAAT ATATGTGGTA CGACGTAGAA
CTGAATGCAG AGAACGTCGC GAATGGTGCA AGCACAAAAA CTGATTTTAA CCAAGCATCG
CTAGGTGTGG AATATCGTTT CTAA
|
|---|
| Protein sequence | MKSNVVTLIG LFSLATFSTL SHAADSKDHG VYVGANYGYL KVDGQDDFDD DSDAIQGLVG
YRFNPYLALE GGYIDFGSYG NNLANAETDG YTAALKVTAP IADRVDLYAK GGQMWYSTDY
NVAGFQGNKD DEGVFAGAGV GFKVTDNFLV NAEYMWYDVE LNAENVANGA STKTDFNQAS
LGVEYRF
|
|---|
| |