| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_004232 |
|---|
| Symbol | |
|---|
| ID | 8557993 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | + |
|---|
| Start bp | 2909144 |
|---|
| End bp | 2910664 |
|---|
| Gene Length | 1521 bp |
|---|
| Protein Length | 506 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 646407354 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003286855 |
|---|
| Protein GI | 262395001 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG3710] DNA-binding winged-HTH domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000000250821 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGATT TTTTGCAACA AGCCAAACAA ACTCACAGTT GTATTGCGAT TGGCGAGTTG
GTCTATAATC CGAAGACACA AACTCTTCAT CAAGACACTG TCGCGATTGA TCTCGAACCT
CGTACCATTG AGTTATTAGA GCTGCTGCTA ACAAGCGTGG GACATCCGCT CTCTGCCGAT
ACCATTATCG AAACCATTTG GCAGAGCAAA TTCATCTCTA AGAATGTACT CACTAACCGC
ATTAGCACCT TACGTGCGCT GCTACAACAG CATCTCCCCG AGTACGATGC GACTAAGCTC
TTGGTCACTT ATCCTCGCAA AGGTTACTTT CTAAACCCAG CGAATATCCG TTTAGTGCCA
CCAGCGAAAA ACCATCGACG TGCTATTACA GCTCAAGTTG AGAACCGTAA GAACATCAAG
CTGATTTTGG CTTATAGCTT ATGTGCCGTA CTTGTGGTTT GTAGCGTGAC GCTCGCAAGC
TTGTTATGGC AACGCCAAGA GATTTCAACG CAGCAAACAC GTCATCAGTT ACTTATCCCC
AAAGTCGAGT TGCTGCTCAA CCGTGTCGAT GCGATTGGCT CCCAAGCAAG AAAATATCGC
ATACTGGTCA AAGCCATCTT GCTGCAACAA CAGGTCGAAT ATCCATACAC CGACATCGCC
AACCAAGACG CTCCCAGTTA CTTTCTTGAT CCTATCGGTC ATACGCCGTA TTTCCCTGGC
GCGCGAAACA TGCAGACCAG TGATTACGAA CTCAACATAG AGTTAAAAGA CGGCGCAGAG
CAAGGCACCT TGAAAGCTCA GATGAACCTT ATTTATCCTG CGACAGGGAA ACTGGCGTTT
CGCAACGAAT ACACACTGCG CTTATCCGAC CTACAATCGG ATATCTTCCA AATTCACTCA
GATGTCGCGC AATACTTCAA CTTGCCTGCA CCTTCGGCAA GCACATGGCA GCTGTCAGAC
GTTCACCAAA AAATGCTGTT TGAGAATGTC TTTTCTAACC AACCTCTCCA ACAAGCTGAT
GAGTTTGCAG CGATCACAAC CGCAAGGCAT CTCGCTTTGT ACGAGCAAGA ACCTCAAAAG
CTGGAAGCGT ATTTGACGCA AGTGCAGTCG TCGTTCGATG TTTTGCCAGA TGAGCTAAGC
CTCTGGTTGG GCGTATTGCA TTTCAAACTA GGTAACCTAG ACCGAGCAAA AGTTCTGCTG
ACCACTCCAG ATGGCGACTC ACGTATTCAA AACGCGCTGA TTTATACGTT TGTGTCTCAC
ATCGCTTATA AACAAAACAA ACTCGAACAG TTCCGTCTCA ACTACATGGA ATCACTGGTG
GCACTGCTGC GCGTTTTACC TTCCGAGACA TTGTTTGAAC GTCTTTCTCA ATCTGAATCG
AAAGAAACTT GCCTTCAACC ATGGAAAACG TTGCATGTCA GTTTGACCGA TCAAGAAATT
ATCAGCCGAT GGAAAGCGCT CATCAACGAG TATTGCACCA ACGTAGCTAA CGAAATAAGC
CCAAATAAAA CAAAGACCTA A
|
|---|
| Protein sequence | MRDFLQQAKQ THSCIAIGEL VYNPKTQTLH QDTVAIDLEP RTIELLELLL TSVGHPLSAD
TIIETIWQSK FISKNVLTNR ISTLRALLQQ HLPEYDATKL LVTYPRKGYF LNPANIRLVP
PAKNHRRAIT AQVENRKNIK LILAYSLCAV LVVCSVTLAS LLWQRQEIST QQTRHQLLIP
KVELLLNRVD AIGSQARKYR ILVKAILLQQ QVEYPYTDIA NQDAPSYFLD PIGHTPYFPG
ARNMQTSDYE LNIELKDGAE QGTLKAQMNL IYPATGKLAF RNEYTLRLSD LQSDIFQIHS
DVAQYFNLPA PSASTWQLSD VHQKMLFENV FSNQPLQQAD EFAAITTARH LALYEQEPQK
LEAYLTQVQS SFDVLPDELS LWLGVLHFKL GNLDRAKVLL TTPDGDSRIQ NALIYTFVSH
IAYKQNKLEQ FRLNYMESLV ALLRVLPSET LFERLSQSES KETCLQPWKT LHVSLTDQEI
ISRWKALINE YCTNVANEIS PNKTKT
|
|---|
| |