| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_004010 |
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| Symbol | |
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| ID | 8557746 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | - |
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| Start bp | 2660478 |
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| End bp | 2662481 |
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| Gene Length | 2004 bp |
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| Protein Length | 667 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 646407108 |
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| Product | GGDEF domain protein |
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| Protein accession | YP_003286635 |
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| Protein GI | 262394781 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTACCT TTGCTCGAAC ACTGTTGCTT TTTACTTGTT GCCTACTGAG TTTGAATGTA
AAAGCTGAAT CACCTTTAAT TGCTCATTAT AAAGTTGCGA CAGAAGCGGA TGATGTCGTC
ACCCGTGTTC TTTTTAATGC TGCATCGAAA GAGTTCGGCT TTACCGTTCA ATATGTGAAC
TATTCCAGCT TTGATGCCAT TCTAAATTCC GTCGCGAATG GGGAAGCGGA TTTTGCTGCG
AATATCACTT ACACAGAAGA GCGTGCTCAA CGCTTTAGTT ACTCCCGCCC AACTAATATC
GAATATACCT ACCTTTTTGG TTTAAAAGAC TCGACGTTGA GTGACATTTC ACGAGTTGGC
GTCCCTAAAG ATACGGTTTA TGCCGAATTA CTTAAACAAT ACTACCCGGA GCTAAAACAG
GTCTCTTATC AAGGTCATGA CCAAGCGGTA ACGTTACTGA GATCAGGCGT TGTTGAAGGC
GTAGTCGATG CCATCAATCA GCTTAAGCCG ATGCTGCTGG AGGGCTTTGA CGCTAAGATG
TTGAATGATC AGATTTCGAT AAAGCCAGTA TCGATCATCA GTAAAAAAGA TCATCATCTC
GAAGAGTTGG ATACGTTCGC TACGTTTATT CATGGGGAAG GAGTGCAAAA GCAACTTCGT
GAAGAAATCT CCCAGTATCA ATTTGAATTA AGGCGAGCGG CATTGCGAGA ATCTATTCGC
TTATTACCTC TTGATTTCAG TGAGCCAATA CGGATCAAGC TCGAATCTAT CTTTCCATAT
GTTGTTTACA ACGAAGACGG CAGTATCGAA GGGATGACGG CAGATGTCGT CCTGAGAAGC
TGTGAGATCT TGGCATTAAA CTGCGTGATC ATTAGTGAGC CAAATGAAAG TTGGGGTTCC
ATGTATCATG AGTTTATGCA GGGGAATTTT GAAATTTTAG CGCCGTTAAC GGTCAGTCGC
GAGCGACATG AATTTAGTTA CTTTCCCAAA CCCCATTACT CACCAGCATC CGTTATGGTC
AAGCGTTTAG GTTACAAGCC GAACACTTAC TCTCATGTGT CACAGTTGAT CTCTGAGCGG
ATTGGCGTGG TTGCGGACGA CTTTTTCGAC CAAATGATGA CGCAACTTTT ACCGCTAAAA
GAGCTGAAAC GTTATCGTAC CCAACAAGAA CTCATTCAGG GTTTATTGAA TGAAGAGGTC
GATTACATTC CGATGGATAC AGCGATGCTC AACCACTTTT TACGTCTGAG CGAGTTGGTT
CCGATAGAGC AGGACACGGC GATTGGCGAG TTTTACCAGT CACAACTTTC TGTTGGATTG
GTGGCGAACG AGAAAGGTGC CATGCTTGCT CCTTTTTTCA GTCGAGCGAT AGCGATGTTG
GAAGTTGATA AGATCATTGC CCAGTACGAC CTGCGCCCAG ATTGGCGTAC CGCGCTTGAA
TATGAGGTTC GGCTGGCAAC GCAAACGCAG GCTGTGTTTG TCTTTGTATT GTTGTTTGCG
ATTTGCGTTT CGCTTTATCT TTATCGTCAA TCGAATACTG ACAATTTAAC GGGGTTAAGA
AATCGCCGCG CGTTGCAAGT AAAACATCGA AAAGGCGTAA ACAAAGATCT ATCCATACTT
TACTTGGATA TTAACCACTT CAAACGAATC AATGATACGT ACGGTCACCG TGCTGGTGAT
GAGGTGTTGC AATTATTGGC GCTAAAAATT CATTATGTAT GGTCAGGAAA AAGTTACCGG
ATAGGGGGAG ATGAGTTCAT ACTGTTGGGC TATCCGACTC AAGCAGAATT AAATAGGGCA
ATGAAAGAGC TCAGCAGAAT TGATGTAAAA GGCAAACTGT GTAGTGAGTT AGAGTCTGTG
GGTATCTCTA TCGGTGTCTC TGCAAAAAGA GAACAGCACA TGAGCTTAGA GCAAGCCATG
CATTTAGCTG ATGAAGATAT GTATTCAAGT AAGCAGTCAA CACGCCGTTA TCCTTCTTCG
CATCGTTACG TGGCTCAATC ATAG
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| Protein sequence | MTTFARTLLL FTCCLLSLNV KAESPLIAHY KVATEADDVV TRVLFNAASK EFGFTVQYVN
YSSFDAILNS VANGEADFAA NITYTEERAQ RFSYSRPTNI EYTYLFGLKD STLSDISRVG
VPKDTVYAEL LKQYYPELKQ VSYQGHDQAV TLLRSGVVEG VVDAINQLKP MLLEGFDAKM
LNDQISIKPV SIISKKDHHL EELDTFATFI HGEGVQKQLR EEISQYQFEL RRAALRESIR
LLPLDFSEPI RIKLESIFPY VVYNEDGSIE GMTADVVLRS CEILALNCVI ISEPNESWGS
MYHEFMQGNF EILAPLTVSR ERHEFSYFPK PHYSPASVMV KRLGYKPNTY SHVSQLISER
IGVVADDFFD QMMTQLLPLK ELKRYRTQQE LIQGLLNEEV DYIPMDTAML NHFLRLSELV
PIEQDTAIGE FYQSQLSVGL VANEKGAMLA PFFSRAIAML EVDKIIAQYD LRPDWRTALE
YEVRLATQTQ AVFVFVLLFA ICVSLYLYRQ SNTDNLTGLR NRRALQVKHR KGVNKDLSIL
YLDINHFKRI NDTYGHRAGD EVLQLLALKI HYVWSGKSYR IGGDEFILLG YPTQAELNRA
MKELSRIDVK GKLCSELESV GISIGVSAKR EQHMSLEQAM HLADEDMYSS KQSTRRYPSS
HRYVAQS
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