Gene VEA_003616 details

Gene Information

• Locus tag: VEA_003616
• ID: 8557349
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio sp. Ex25
• Kingdom: Bacteria
• Replicon accession: NC_013456
• Strand: +
• Start bp: 2219616
• End bp: 2220251
• Gene Length: 636 bp
• Protein Length: 211 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 646406711
• Product: hypothetical protein
• Protein accession: YP_003286241
• Protein GI: 262394387
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3063] Tfp pilus assembly protein PilF

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATACCA AACAACTACT TTGCGCTTTG ACGATTTGTT CAACGTTAGC TTCGACCGCT 
GCGTTGGCAG GTAATGCTCC ACTGCAACAG GTTCAAAAGA AATGGGCGGA ATGTCAGTAC 
AGCACGCCTG ACGGTGACGA AAAGGAACAA TGCTTCCATC GCGCGATTGC CAAAACCAGT 
ATTTATCTCG ACAGAGAACC GGGCAATCCC GAACTCACTG TTTGGCTGGC AATCAATAAA 
GCATCGCTGG CTGGTGCTCA AGGTGGCTTG GGTGCACTAT CACTCGCCAA AGAAGCCAAA 
TCTTTACTCG AAGGGGTAAT CGCAACGTCA CCGCAAGCGC TTGATGGATC TGCATACACC 
AGTTTAGGTT CTCTGTATTA CAAAGTTCCG GGCTGGCCAA TTGGCTTTGG TGATGACGAT 
AAAGCCGAAG AAATGTTGAA AAAAGCGTTA GAGATCAATC CAAAAGGCAT CGATCCGAAC 
TATTTTTATG GAGACTTCCT TGCAGAAGAA GGTCGAGACA AGGAAGCGAA AGTGTATTTG 
ACTCGCGCAA TGCAGGCGTC ACCTCGCCCT GACCGACCTT TGGCTGATAA AGGTCGAAAA 
CTGGAAATTG AAGCGACTCT TGGGAGTTTG AAATAA 

 

Protein sequence

MNTKQLLCAL TICSTLASTA ALAGNAPLQQ VQKKWAECQY STPDGDEKEQ CFHRAIAKTS 
IYLDREPGNP ELTVWLAINK ASLAGAQGGL GALSLAKEAK SLLEGVIATS PQALDGSAYT 
SLGSLYYKVP GWPIGFGDDD KAEEMLKKAL EINPKGIDPN YFYGDFLAEE GRDKEAKVYL 
TRAMQASPRP DRPLADKGRK LEIEATLGSL K