| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003556 |
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| Symbol | |
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| ID | 8557289 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | - |
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| Start bp | 2146439 |
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| End bp | 2147980 |
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| Gene Length | 1542 bp |
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| Protein Length | 513 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646406651 |
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| Product | GGDEF family protein |
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| Protein accession | YP_003286181 |
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| Protein GI | 262394327 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3614] Predicted periplasmic ligand-binding sensor domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000111859 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACAAA GCACCGCTCA CAAGAGCGTT ATCAAACGAC ATTCAGACTC TATTCTAGCT
TTTGCAGCGA CGTTGTGTGT CACTGCTGGT GTGGTCGGTG CTGCTTATAC GATGCAGCAA
CGGTATACGC AGACGACGTT TGATACTTTA GCTGACCGAC AAGCAGAATC ACTGAAAGCG
AACGTCGAAA ATGATTTAAA GTTTATTGGT GCAGGTGCAA ACTTTTTTCA TTCGATTGAA
CGCACCTATT GGTCTTCGTT CCCAATGTAT GCGGAACACG TAATCAATAG CTCGCGAAGT
CTAATTGGAC TTCAATGGAT GCAAAAGGTC GAATTCGAAG ACCTTGATGA GCATATTTTA
AAGACCCGTC AAACATTTCC TGATTTCCAA CCGTTTACCG TTCCTAAAGA TGGCCCCAAA
ACCTACGGGT ACATTTTTGA ACACAAAGAG CCAATTTTTA TCGCATCGGA TATTTATCCA
AGAACACCAG AAAACCTTTC TCTACTGGGT TTCTATTTTT CACGTAAACG CTTCGCTCTC
ATCTTGGATG ATATATCCAC AAATGGGCGA GCGAATGTCT CGGATAAAGT TCGCTTACTG
CAAGATGGGT ATGACAAGTC CATTCCTAAA ACTGGGCTGC TAGTGTTCCA TCCAGTGTTT
GACTTCGAGA ACCAACATTT ATTAGGTGTA GTGACAGGGG TGATTCGAAG TACGGTTTAC
TTTGAGGATT TGATCACGAA AACCGCGACC GAGCTAGATA TGTCGGTGCG CGTAGAAGAT
TTAGGCTTTG ACGCAGCAGA TGACCCCGTT CTCTTCCAAA GTTCAAACTG GGACAACATT
CGAGGAACGG TTATAAGCCG TACCATTCAA CTGCCTAATC GTGAGTGGCG GATTGATTTT
AAACTTTCTG ATGCCGTCTC TGCTTGGGAG CGTTCTATTT TAGCGGGCAC GACATTAGCC
GGGTTGGTAA TCGCCTTTTT GATTAGTTGG ATTGTGAATT TACAGTCACG AGAAAAAGAG
CGCTTGGCGG TCATGTTAGA GCTTAAAACC GTCGAATTAA AAAGGATGGC TGAGCGTGAC
CCTCTAACTC AGTTACTCAA TCGCCGAGCG TTTAACGATC ACTTGCTTAG CCAGATAAAT
AAAGGTGTTA GCTTCGCATT GGTTGGTTTT GATATCGACC ACTTCAAAGT TATCAATGAC
AAGCATGGTC ATTTAGGGGG AGATGAAGCA TTGCAGCATG TGACTAAGCT AGTCAGTGCG
AATCTAAAAC CTGGAGACCG ATTTTATCGT GCTGGTGGTG ATGAGTTCTG TATTATTTCT
AAAGTCATTG ATAAAGAAGC ACTGGAAGCT TATCTGGAAA AGTTGCGGAG TATCGTGGCA
AGTACGGCTT TTGACTATGG CGATACTTCA ATCATTTGCA CGTTAAGTAT CGGCGCGGCT
GTCCATAAAG ATGAAGATCC TGAAAGCTTG TATCACAAAA TGGATAATCA ACTTTATTTG
AGTAAAAAAA ACGGTCGTAA TAATGTGTCG ATTGGCGATT AA
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| Protein sequence | MTQSTAHKSV IKRHSDSILA FAATLCVTAG VVGAAYTMQQ RYTQTTFDTL ADRQAESLKA
NVENDLKFIG AGANFFHSIE RTYWSSFPMY AEHVINSSRS LIGLQWMQKV EFEDLDEHIL
KTRQTFPDFQ PFTVPKDGPK TYGYIFEHKE PIFIASDIYP RTPENLSLLG FYFSRKRFAL
ILDDISTNGR ANVSDKVRLL QDGYDKSIPK TGLLVFHPVF DFENQHLLGV VTGVIRSTVY
FEDLITKTAT ELDMSVRVED LGFDAADDPV LFQSSNWDNI RGTVISRTIQ LPNREWRIDF
KLSDAVSAWE RSILAGTTLA GLVIAFLISW IVNLQSREKE RLAVMLELKT VELKRMAERD
PLTQLLNRRA FNDHLLSQIN KGVSFALVGF DIDHFKVIND KHGHLGGDEA LQHVTKLVSA
NLKPGDRFYR AGGDEFCIIS KVIDKEALEA YLEKLRSIVA STAFDYGDTS IICTLSIGAA
VHKDEDPESL YHKMDNQLYL SKKNGRNNVS IGD
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