Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_003519 |
Symbol | |
ID | 8557252 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013456 |
Strand | - |
Start bp | 2105196 |
End bp | 2106038 |
Gene Length | 843 bp |
Protein Length | 280 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 646406614 |
Product | diguanylate cyclase (GGDEF domain) with PAS/PAC sensor |
Protein accession | YP_003286144 |
Protein GI | 262394290 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000133532 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGTCAT ACAGTGGCGT TCTGTCACAA GAAATCCTTG GCCAATGTTT ATTTGATCAT TTTGAAGAGC TGCCAAAAAC TTGGCTAGAA ACCAAGATAA AAACCGCCGC CGATCTGGAA ACTCGTTCCT TCTCTAGCTG GGAAAACCGG CCGTACCTTT TTAAATTCAA CAATTTTTCT CCGGTTTCAA ACAGCAGTGA TTTCATGTAT CAAGACATCG TAATCACCCC GTTAATTGGG CTCTCAGGAG AGGTCAGTCA CATTGCTATT CAAGTGAATG ATGTCTCTGA AACGGCAAGA AATCGCATTC ATTTGAAAGA AACAAATCAA CATTTGTCTG AAATCAGTCG CAAAGATGGT TTAACAGGTT TATTTAATCG TGCTTATTGG GAGCAATCGC TGAAAGAAGA GTTTGCTCAC CTAAAAGTTA TCGACGGACC ATGCTCATTA GTAATATTTG ATATCGACCA CTTTAAAAAA GTGAATGATA CCTATGGTCA CCCGACGGGA GATGAAGTCA TTCGTCGTAC TTCTTCGTTA TTAAGAAAGA CAGCAAGAAG CAGTGATGTG TGCGGTCGTT TTGGCGGAGA AGAGTTTACG GTATTGCTTC CTCATACGAA TCAAGAACAA GCTTGCTATT TCGCGGAGCG TTTACGTAAA AGAATTGAGC AAGAGATCGT GAAAGTGGAA GATTTTTTGA TTAATTACAC GATAAGTATT GGTGTTTGCG AGTATAAACC TTATTTTGAA ACTCACACTC AATGGTTAAA GAGTGCCGAT GCTGCGTTGT ATCGTGCAAA AGAAAACGGT CGTAACCAAA CTTGTTTGCA TGAAAATGAC TGA
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Protein sequence | MQSYSGVLSQ EILGQCLFDH FEELPKTWLE TKIKTAADLE TRSFSSWENR PYLFKFNNFS PVSNSSDFMY QDIVITPLIG LSGEVSHIAI QVNDVSETAR NRIHLKETNQ HLSEISRKDG LTGLFNRAYW EQSLKEEFAH LKVIDGPCSL VIFDIDHFKK VNDTYGHPTG DEVIRRTSSL LRKTARSSDV CGRFGGEEFT VLLPHTNQEQ ACYFAERLRK RIEQEIVKVE DFLINYTISI GVCEYKPYFE THTQWLKSAD AALYRAKENG RNQTCLHEND
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