Gene VEA_003407 details

Gene Information

• Locus tag: VEA_003407
• ID: 8557140
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio sp. Ex25
• Kingdom: Bacteria
• Replicon accession: NC_013456
• Strand: +
• Start bp: 1979744
• End bp: 1985872
• Gene Length: 6129 bp
• Protein Length: 2042 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 646406502
• Product: putative calcium-binding outer membrane-like protein
• Protein accession: YP_003286032
• Protein GI: 262394178
• TIGRFAM ID: [TIGR03661] type 1 secretion C-terminal target domain (VC_A0849 subclass)

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGCAACA TCGTGGTTAT CGGGCTGGAT GGGGAAATTA GGACCCTAGA AGAGGGACAA 
CTACCTCAAC CAGGAGAGTT AATAATTGAT GAGGTATCAG ATACTTCTGA GCTTGTGATC 
GAGCAGGTGA CACCACAAGG AAGTTCGATA AACGTAACTG ATGATATCAC AGCGTTAATT 
GAAGCAATTG CTAGTGGGGA AGACCCGACT GAGCTGGGTG AAGAGTTTGA TCCTGCTGCA 
GGTGAAGGAA ACGGGTCTAG CCCACAAAAT ACCGGGGCTA TAGATCGCAC AGGTGCTGAA 
TTACTCGCCA GTACCAATTT TGAGACAGTG GGAACTGACG GAACAGGATT TTCAAGTACT 
CAGGTAGAGA CGCTACTCGA TATTTTCCAA ATACAACCAC CAGAACCAAC AGCAATATCA 
GTTCCTGCAA CAGTAATTGT TCAAGAGATT TCTAGCCCAA CTGTCAATGA GGGCGATCTG 
GTTTCCTTCG ACGTCACACT TAACCAACCA ACAGAAGATA ATATCAATAT CACTTTTTCT 
CTGTTCGATC AAACTGCGAC TGGTGGATCT ACTAACGAGA GCGGAAGTGA CTACGTCAAC 
GAGAGTGTTC TCATAACATT TTCCGATGGC ACAACAGAAG AAATCTCAGT CGATGACAAC 
GGTATTTTTA CTATGTCGGT CCCGTTAGGT GAAAATGGTT TTACGGTTTC TCTCGACTCT 
ATAAATGACT CTATATTCGA AGGTCCAGAA ACATTTACGC TTTCTGGCAA CACAGAAGAA 
CAAAGTACAC CTGCAACTGG GATTGCAACC ATTGTTGATG ATGGTAGTGG GCCTGGTTTA 
AGTCCTGATG ATGATCGTCC AACGGTAACG ATGAGCGATG CAGGGACGAT TAATGAAGGT 
GAGTTAGCCA GCTTTAAAGT GTCTTTATCG AATCCATCAG CTACAGATGT TGAGGTCGAA 
CTAAGTCTCA ACCTCGGTGA TACAGAAGCC GGCGACTTAG GCTCCTTGGA ATACAACAAG 
GGAAGTGGTT GGGTCACAGT GCCAAACGAT GGAGTGGTAA CGGTGCCAGC CGGACAGACC 
GAATTTGATG TGCGTATCGC TTCTATTGAT GACGCCGTTT ATGAAGGTCC TGAAGATTTC 
AGCGTGACGG TAACTGGCAT TGGGGCGGTG CAAGGCAGCG ATATAGGTAC GGCAACGATT 
GTGGATGACG GCAGCGGCCC AGATCCCGAT CCGGATGACG ACCGTCCAAG TGTGACCATC 
AATGATGCTG GCACCATTAA TGAGGGGGAG ACAGCCAACT TCAAAGTCAC ATTATCGAAC 
GCGTCTGAAG CTGAAACGCA AGTGGAGTTG GGTCTTAATC TCGGCGATAC CGAAGTTGGA 
GATTTGGGCA CTTTGGAATA CAACACGGGC TCTGGTTGGG TCACAGTACC GAACGATGGT 
GTGGTGACGG TGCCTGCCGG GCAAACTGAG TTTGATGTGC GCATTGCTTC TATTGACGAT 
GCGGTGTACG AAGGTCCAGA AGATTTCAGT GTAACGGTAA CGGGCGTTGG TGCGGTACAA 
GGCAGTGATA CGGGCACGGC AACGATTGTG GATGACAGCA GTGGCCCAGG TCCCGATCCA 
GACGATGACC GTCCAAGCGT GGCTATTACC GACGCTGGCA CCATTAATGA GGGTGAGACT 
GCGAACTTCA AAGTCACCTT ATCGAATGCC TCCGAATCGA GTGTTCAAGT TGAACTTGGC 
CTCAACTTAG GCGATACCGA AGTTGGAGAT TTGGGCACCC TAGAATACAA CACGGGAAGT 
GGTTGGGTTG CAGTGCCAAA TGATGGCGTG GTGACGGTGC CAGCTGGGCA AACCGAATTT 
GATGTGCGTA TTGCTTCTGT TGATGACGCC GTTTATGAGG GCCCTGAAGA TTTCAGTGTC 
ACGGTAACCG GCATTGGTGC GGTGCAAGGC AGCGATACGG GTACAGCAAC GATTGTGGAT 
GACGGCAGTG GCCCTGGACC TGATCCCGAT GATGACCGCC CAAGTGTGAC TATTACCGAT 
GCTGGCATTA TTAATGAAGG TGATACGGCG AACTTCAAAG TGACGCTGTC GAATGCCTCC 
GAGTCCACTG TTCAAGTCGA GCTAGGCCTC AACTTGAGTG ATACCGAAGT CGGTGACTTG 
GGCACCTTAG AATACAACAC GGGAAGTGGT TGGGTTGCAG TGCCAAATGA TGGCGTGGTG 
ACCGTGCCAG CCGGGCAAAC CGAATTTGAT GTGCGCGTTG CTTCTATTGA TGACGCCGTT 
TATGAAGGCC CAGAGGATTT CAGCGTTACG GTGACGGGCA TTGGGGCGGT GCAAGGCAGC 
GATACAGGTA CGGCGACGAT TGTGGATGAC GGCAGTGGCC CGGGCCCCGA TCCAGACGAT 
GACCGCCCGA GTGTGACTAT TACCGACGCT GGCACCATTA ATGAAGGTGA TACGGCGAAC 
TTTAAAGTCA CATTATCGAG TGCCTCAGAG TCGAGTGTTC AAGTTGAACT CGGCCTCAAC 
TTAGGTAACA CCGAAGTCGG AGACTTAGGT ACCTTAGAAT ACAACACGGG CTCTGGTTGG 
GTTGCGGTGT CAAACGATGG TGTGGTGACG GTGCCTGCCG GGCAGACTGA GTTTGATGTG 
CGTATCGCTT CCATTGATGA TGCGGTGTAC GAAGGTCCGG AAGATTTCAG TGTTACGGTA 
ACGGGCATTG GCGCAGTACA AGGCAGTGAT ACGGGCACGG CGACGATTGT GGATGACGGC 
AGTGGCCCGG GCCCCGATCC AGACGATGAC CGCCCGAGTG TGACTATTAC CGACGCTGGC 
ACCATTAATG AAGGTGATAC GGCGAACTTC AAAGTCACAT TATCGAACGC GTCTGAAGCG 
GAAACGCAAG TGGAGTTGGG TCTTAATCTC GGTGATACCG AAGCCGGCGA CTTAAGCACC 
TTGGAATACA ACACGGGCTC CGGTTGGGTT GCGGTGCCAA ACGTTGGCGT GGTGACGGTG 
CCTGCCGGAC AGACCGAATT TGATGTGCGA ATTGCTTCTA TTGATGACGC CGTTTATGAA 
GGCCCAGAGG ATTTCAGCGT TACGGTAACG GGCATTGGCG CAGTACAAGG CAGTGATACG 
GGCACGGCAA CGATTGTGGA TGACGGCACT GGCCCAGGAC CCGATCCAGA TGATGACCGT 
CCAAATGTCT ACATCGTTGA AGATAGCGTG GGTGTTAACG AAGGTACTGA TGCTGTGTAT 
ACCGTTAGAT TATCGGCGGC GGCCGATATC GATGTGACCG TCAGGTTGAA CACCTCAACC 
GACGGCAGCA ACACGGCGGA AGCGGACGAT ATAGGTAGCT TTGTGGTGAC CCTTGCTGAT 
GGTGTGACAG TGGTGAATGC CAACAGTGAC AGTGCGTATA CCATTCCCGC CGGTGAGAAC 
GAGCTGAAAG TCACTGTGCC AACCACAGAT GATGGCGTCT ACGAAGGGGA TGAAACCTTC 
ACTGTGGCGG TACAAGGTGA CACGGGCGTC CTAGGCAGTG ACAGTGCGCT GGGCATTATT 
TACGACGGTG GTAACGGCCC TGGTACCGAT CCAGACGATG ACCGTCCAAG TGTCTATATT 
GTCGAAGATA GCGTGGGCGT GAATGAAGGT ACTGAGGCTG TGTATACCGT CCGGTTGTCG 
GAGGCTGCCG ATATTGACGT GACGGTAAGG TTGAGCACAT CAACAGGAGG AACTAATACG 
GCAGAGCCTG GCGACATTGG TGCTATTAAG CTGACATTAT CTGATGGAGT AACTGTCGTG 
ACCGCCAACA GTGATGGCAC GTATACTATC CCAGCAGGTG AAACCGATCT CAAACTGTTT 
GTCCCAACCA CGGACGACGA TGTGTATGAA GGAGATGAAA CCTTCACGGT TGCAGTGCAA 
GGTGCAACTG GAGTACTTGG TACTGACACT GCGTTGGGCA TTATTTACGA CGGCGGTAAC 
GGCCCTGGTC CTGACCCGGA TGATGATCGC CCGACCGTAT CTATCTCAGA TGCGGGTATC 
GTAGATGAGG GTGATATCGC GACGTTTACC GTGTCATTGA GTAATGCTTC GGAAGGTACA 
GTCCAGGTGC AGTTGACCTT AAACCCAGAC GGAACAGAAG TGGATGATCT TGGCTCGCTA 
GAATATAACA CCGGAGCAGG TTGGGTTGCT GTGCCTGTCG ATGGCATCGT AACAGTGCCA 
GCAATGCTTA CCGAATTTGA TGTGCGCATT GCGACCATTG ATGATGAAGT TTATGAAGGT 
CCGGAAGACT TCAGCGTGAC CGTGACGGGT TTGGGCGCAG TTCAGGGCAC CGATACTGGT 
TTGGCGACCA TTGTGGATGA TGGCACTAAA ACGGATGACG ATCGACCAAC TGTGTCTATC 
TCGGATGCGG GTACCATTGA TGAAGGTAAT TTCGCTACAT TTACCGTGTC ATTGAGTAAT 
GCTTCAGAAG CCGCGGTCCA GGTTCAGTTA ACGCTGAACC TGGATGAAAC AGAAGTAGGT 
GACCTTGGCA CTCTAGAGTA CAACACCGGT TCAGGTTGGG TAAGTGTACC TGTAAGTGGC 
ATTGTGACGG TGCCGGCAGG TATGACGGAA TTTGATCTAC GCATCGAATC AATTGATGAC 
GGTGTGTACG AAGGCCCTGA AGATTTCAGC GTTACAGTAA CTGGCTTGGG AGCAGTGCAA 
GGCAGCGATA CTGGTCTGGC GACCATCGTG GATAACTCAC CACCCACAGC CCGTGATTTC 
ATCATTTCGC TCGATGTTCA AAATGGTATT TTCCCGGTTC AGGATGTTGA GTTTGATGGA 
TTAACGACGT CTGGGGAACA GCGTGTTGAA GATCTCGAAG ATGACGCAGT TACTGCAAAT 
GATGATGATA TTTTAATTCA GGTCGTTGGC CTTCCTGAAC ACGGTGAACT GTATTATGTG 
GATGGAAATG GACAGGAAGT CATTATAGAC GAAACCACAC AGTTCCCTGA AAACACAGAG 
GTTAAGTATC GTCTGACTGA AGATTTCTTT GAGGAGCAGA GCTTTGACTC AGCCGATCTT 
CTTGAAGAAC AAGGGAAAGA TATCTTGGTT GGTTCTTACA CTCCTCCTAA CTCGAACTTA 
ACGTTCACTG GAGGTCAGAT CACCACCATT GGCAACAGCA TCATCTTTGA TTCCGACGCT 
CAGATTTCAG TCGATTTTGC GAATCAACAG GTCGGGTTGG TTGTCGTTTC GCCAAATGAA 
ACGGGTCAGG GTGATGAAAT CAGTACTGGT GAATATATTA CGTTAGAACT GGATGAGGAT 
TTATCAGCAA ACGAAGCGAA GCTGAACTTA GCCAGCCTGA ATGACCGCTT CAACAGTGGT 
AGTGCATGGT TAACGGCATA CATCTTCCTA AATGGTGCAC TTGTTGATGT TCAGCAGTTT 
TACTCAACGG ATATTACTTA TACCAGCAAC CACGAAGGTT CTATTACCGT TGCGTTAGCA 
AATGGCAGCT TTGATGAAAT TCGACTTACT CCAGAAACCG ATAGCGCGAG TGATAAAGCG 
GGCTTTACCT TGGTGGGGAC TGAAATTACC AGCTTTACTG ATGTGAACGA TGACTTTACT 
TATCAGGCAA TCGACACTGA TGGTGCGGTA AGTAACGAAG CTACGGTAGC GGTTGATTTC 
GAGAACGTCA CGGTAGACGC TGTCACGGCG CTTGGTTATC AAACCATGGC CTTAAATTCG 
GATCTGAATC TGGTTATGGG GACAGATGGC GATGATATTC TGGTTGGTAC TGAAGGCAAT 
GACCTGATCA TCGGTGGTTT AGGTAATGAT ATCTTGACTG GCGGTGAAGG TGATGACGTA 
TTCAAATGGA CAGAAATGCA ATCCGCAACG GATACCGTGA CAGATTTCAG TGACGGGGAT 
CAGCTTGATT TTACCGATGT ATTTGATGAT ATGAGTGGTA CGGATATCTC CGCCTTGCTT 
GATGATCTTG GTTCGGGTGA CTATCGCGGC AGTGTGGATG ACATTTCCGT TGAAGTGACT 
GAAAGTGGAG GTAACTCGAC GTTGACCATC AACAAAGATG GACAACAGCT AGAGGTTAAC 
TTTGATGGTG CCTCTGCAGC CGATATTGCC AATAGTCTGA TTTCTAATCT CGAGCAATTA 
CGAGAATAG 

 

Protein sequence

MGNIVVIGLD GEIRTLEEGQ LPQPGELIID EVSDTSELVI EQVTPQGSSI NVTDDITALI 
EAIASGEDPT ELGEEFDPAA GEGNGSSPQN TGAIDRTGAE LLASTNFETV GTDGTGFSST 
QVETLLDIFQ IQPPEPTAIS VPATVIVQEI SSPTVNEGDL VSFDVTLNQP TEDNINITFS 
LFDQTATGGS TNESGSDYVN ESVLITFSDG TTEEISVDDN GIFTMSVPLG ENGFTVSLDS 
INDSIFEGPE TFTLSGNTEE QSTPATGIAT IVDDGSGPGL SPDDDRPTVT MSDAGTINEG 
ELASFKVSLS NPSATDVEVE LSLNLGDTEA GDLGSLEYNK GSGWVTVPND GVVTVPAGQT 
EFDVRIASID DAVYEGPEDF SVTVTGIGAV QGSDIGTATI VDDGSGPDPD PDDDRPSVTI 
NDAGTINEGE TANFKVTLSN ASEAETQVEL GLNLGDTEVG DLGTLEYNTG SGWVTVPNDG 
VVTVPAGQTE FDVRIASIDD AVYEGPEDFS VTVTGVGAVQ GSDTGTATIV DDSSGPGPDP 
DDDRPSVAIT DAGTINEGET ANFKVTLSNA SESSVQVELG LNLGDTEVGD LGTLEYNTGS 
GWVAVPNDGV VTVPAGQTEF DVRIASVDDA VYEGPEDFSV TVTGIGAVQG SDTGTATIVD 
DGSGPGPDPD DDRPSVTITD AGIINEGDTA NFKVTLSNAS ESTVQVELGL NLSDTEVGDL 
GTLEYNTGSG WVAVPNDGVV TVPAGQTEFD VRVASIDDAV YEGPEDFSVT VTGIGAVQGS 
DTGTATIVDD GSGPGPDPDD DRPSVTITDA GTINEGDTAN FKVTLSSASE SSVQVELGLN 
LGNTEVGDLG TLEYNTGSGW VAVSNDGVVT VPAGQTEFDV RIASIDDAVY EGPEDFSVTV 
TGIGAVQGSD TGTATIVDDG SGPGPDPDDD RPSVTITDAG TINEGDTANF KVTLSNASEA 
ETQVELGLNL GDTEAGDLST LEYNTGSGWV AVPNVGVVTV PAGQTEFDVR IASIDDAVYE 
GPEDFSVTVT GIGAVQGSDT GTATIVDDGT GPGPDPDDDR PNVYIVEDSV GVNEGTDAVY 
TVRLSAAADI DVTVRLNTST DGSNTAEADD IGSFVVTLAD GVTVVNANSD SAYTIPAGEN 
ELKVTVPTTD DGVYEGDETF TVAVQGDTGV LGSDSALGII YDGGNGPGTD PDDDRPSVYI 
VEDSVGVNEG TEAVYTVRLS EAADIDVTVR LSTSTGGTNT AEPGDIGAIK LTLSDGVTVV 
TANSDGTYTI PAGETDLKLF VPTTDDDVYE GDETFTVAVQ GATGVLGTDT ALGIIYDGGN 
GPGPDPDDDR PTVSISDAGI VDEGDIATFT VSLSNASEGT VQVQLTLNPD GTEVDDLGSL 
EYNTGAGWVA VPVDGIVTVP AMLTEFDVRI ATIDDEVYEG PEDFSVTVTG LGAVQGTDTG 
LATIVDDGTK TDDDRPTVSI SDAGTIDEGN FATFTVSLSN ASEAAVQVQL TLNLDETEVG 
DLGTLEYNTG SGWVSVPVSG IVTVPAGMTE FDLRIESIDD GVYEGPEDFS VTVTGLGAVQ 
GSDTGLATIV DNSPPTARDF IISLDVQNGI FPVQDVEFDG LTTSGEQRVE DLEDDAVTAN 
DDDILIQVVG LPEHGELYYV DGNGQEVIID ETTQFPENTE VKYRLTEDFF EEQSFDSADL 
LEEQGKDILV GSYTPPNSNL TFTGGQITTI GNSIIFDSDA QISVDFANQQ VGLVVVSPNE 
TGQGDEISTG EYITLELDED LSANEAKLNL ASLNDRFNSG SAWLTAYIFL NGALVDVQQF 
YSTDITYTSN HEGSITVALA NGSFDEIRLT PETDSASDKA GFTLVGTEIT SFTDVNDDFT 
YQAIDTDGAV SNEATVAVDF ENVTVDAVTA LGYQTMALNS DLNLVMGTDG DDILVGTEGN 
DLIIGGLGND ILTGGEGDDV FKWTEMQSAT DTVTDFSDGD QLDFTDVFDD MSGTDISALL 
DDLGSGDYRG SVDDISVEVT ESGGNSTLTI NKDGQQLEVN FDGASAADIA NSLISNLEQL 
RE