| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003400 |
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| Symbol | |
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| ID | 8557133 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | - |
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| Start bp | 1957738 |
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| End bp | 1959711 |
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| Gene Length | 1974 bp |
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| Protein Length | 657 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646406495 |
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| Product | GGDEF family protein |
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| Protein accession | YP_003286025 |
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| Protein GI | 262394171 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00535181 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCACGC TCTATCCTTT GCTTGCGTCA CTCTTACTCG CCCCGGTATA TGCTAGTGAC
ACTCAAGATA TTGAGCCAGA ACAAAATATC ACGCAGTGGC ACGCCGTTTA TCAAACCACA
TTGAGAAGTA ATCCTGACTC AGCATTAAGC ATGCTTCAAG ATCGATACCA CACAGCGAAA
TCGCACAGCG AAAAACTCTA CGTCAGCGGG CTGATTTATG AATACATGTC GAACATAAAG
CAGCCGTACT ATGGAAGCAG CCAAGTTCTC AACAATAACT TTGCTCAGTT AGAGTCAGAG
TACATTCTTG CCTTAAATGA ACGTAAGCAT GGTAGTTATG ACGCCTCAGT AAATAGCTTT
TCTTCATTGC GACAAAAAAT GAAGCAGACC TCAGATTCTG AAGGCAAAGC TTTGATGAAC
TATCAGCTCT GTTATACGTT GAATCAACAA GGTCGTTATC ACAAAGCAAA CTTTTATTGC
TCGTCGTTAG AAAGCCATCT AAGTCAACAA CACCAAGAAA ACTTCCCTAT TGATCTCGCG
TTACGTGTGG TAGCGAATAA CTATAACTAT CGTGGTGACT ATGAAAAAGC GCTGAGCCTT
TATCGAAAGC TGCTGGCCAA CATGTCTGCT CAAAGCGATC CTTCTGGCAT TTACAATGAC
GTCGGAAATT TGCTTGCAGA GCTTGGGCAG TTTGAACAAT CAGAACAATA TCTCATCCAA
GCCCTACTCG CTCGTCAAGA TGAAGGGACA CCACTCAAAG TCGCCCAAGT CGAACATAGC
CTTGGGGCAA TGTATAAGAA ATCCAAAGAA TTCGATAAAG CCATCAATCA TTATCAAAAT
GCATTAACAA TACTCAACCA GCTCCAATAC CCATATGGTC AAGGGTTAAG CTACTTAGGG
CTGTCTGCGG TTTTAGCCGA AAGTGGGCAA CTGGATACCG CAGTAGATTA CATTGGAAAA
GCTTTAGACA TTGCTGAAAC GTATGAAAAT ACGCACCTCG AAACGGAAGG ACATTTAGCT
GCTGGGTTCG CGTATTTGAA AAACCATGCT ACTGAAAAAT CGATTGCACA TGGCAAAGTC
GCGTTAACAC TAGCGATCAA TAACTCTAGG CCATTATTAC AGGCACAAGC TCAATTACTC
CTTTCCAAAG CGTACCAAGC CCAAGGTGAT TATAAACTGG CATTAGAGCA CCACGAAGCC
TATTCAAACA TTGAATTGGC CAACCGAGAC GCTAGCAATA TTAAAGCATT AGAGGCATTA
GACCTCACAA AGAAAGAGTA CGAATATGAT CTTCAAGTCG CTCGGTTGAA TAATGAAAAA
AGCTTAAATC AGAATCAATT TGAGAAGCTT ACCGATCAAA AGCGCACTTA TAATTTTGTG
GTTTCCTGTT TGTTGGTCTT GCTCATTCTG GCATTGATAC TTCAGCGACA AACACGACAA
AAAGCCAAAA TAGATAGTCT AACATGTGCG TTGAATAGAG CGGCAATTAT AGAGACCATC
AAAGGTCAAA CCTCCAAAGC GGACGAAGAC TTCCGCTATG TTTTAGCATT AATCGACCTT
GATGACTTTA AGACGATAAA TGATCAATAC GGTCATCCGA CTGGCGACTT GGTGTTACAG
CAAGTTTGCC AAGTGCTTAA AGCTAAGCTC AATAAGGGAG AGTATATAGG CCGTTTGGGT
GGAGAAGAGT TTATCTTACT ACTGAAAAAC GTCGATGAAA TTGACGTTCC TTTCCGCGTA
CAAAGCCTAC ACAAAACGAT TTCAGAGAAG CGCGTACGCA CGGTAAATAA TAGTGATCTG
AGTGTAACCG CTAGCTTGGC CTATCTATCA ACATCAATGC CGCTTACCAA CTTTGATGAA
CTTTATTCGA TACTAGACCA AGCTTTATAC CAGGCTAAAA AGCAGGGAAA AAACATCATT
ATAGACGCAT ACGATGAGCC AATTAGCCTA GGTTCTGACT ATGTTAGCCA GTAA
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| Protein sequence | MRTLYPLLAS LLLAPVYASD TQDIEPEQNI TQWHAVYQTT LRSNPDSALS MLQDRYHTAK
SHSEKLYVSG LIYEYMSNIK QPYYGSSQVL NNNFAQLESE YILALNERKH GSYDASVNSF
SSLRQKMKQT SDSEGKALMN YQLCYTLNQQ GRYHKANFYC SSLESHLSQQ HQENFPIDLA
LRVVANNYNY RGDYEKALSL YRKLLANMSA QSDPSGIYND VGNLLAELGQ FEQSEQYLIQ
ALLARQDEGT PLKVAQVEHS LGAMYKKSKE FDKAINHYQN ALTILNQLQY PYGQGLSYLG
LSAVLAESGQ LDTAVDYIGK ALDIAETYEN THLETEGHLA AGFAYLKNHA TEKSIAHGKV
ALTLAINNSR PLLQAQAQLL LSKAYQAQGD YKLALEHHEA YSNIELANRD ASNIKALEAL
DLTKKEYEYD LQVARLNNEK SLNQNQFEKL TDQKRTYNFV VSCLLVLLIL ALILQRQTRQ
KAKIDSLTCA LNRAAIIETI KGQTSKADED FRYVLALIDL DDFKTINDQY GHPTGDLVLQ
QVCQVLKAKL NKGEYIGRLG GEEFILLLKN VDEIDVPFRV QSLHKTISEK RVRTVNNSDL
SVTASLAYLS TSMPLTNFDE LYSILDQALY QAKKQGKNII IDAYDEPISL GSDYVSQ
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