| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003372 |
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| Symbol | |
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| ID | 8557105 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | + |
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| Start bp | 1926780 |
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| End bp | 1928897 |
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| Gene Length | 2118 bp |
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| Protein Length | 705 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646406467 |
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| Product | Type III secretion inner membrane channel protein |
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| Protein accession | YP_003285997 |
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| Protein GI | 262394143 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4789] Type III secretory pathway, component EscV |
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| TIGRFAM ID | [TIGR01399] type III secretion protein, HrcV family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAAGT TGATCGATAT TTTAAACAAG GTAGGGCAAC GTAAAGACAT TATGCTTGCT
GTGATGTTGC TCGCGATCGT CTTTATGATG ATATTGCCAC TGCCTACCGC GCTGGTGGAT
GTGCTGATTG GCACCAACAT GAGTATTGCG GTGGTGCTGC TTATGTTAGC GATTTACATC
ACTACGCCGC TTGAGTTCTC AGCGTTTCCC GCGGTGCTAC TGATCACGAC ATTGTTTCGT
TTGTCTTTAT CCATCACGAC AACCCGTTTG ATCTTGCTGC AAGGCGATGC TGGTCAAATC
GTTTATACCT TCGGTAACTT CGTTGTGGGC GGTAACTTAG TGGTCGGTAT CGTTGTGTTC
CTGATCATTA CCATTGTTCA GTTTATGGTG ATCACCAAAG GCTCGGAGAG GGTTGCAGAA
GTTAGTGCGC GATTCTCACT TGATGCGATG CCTGGTAAGC AGATGAGTAT TGACGGTGAC
ATGCGCGCTG GGGTGATTGA CGTACACGAA GCACGGCACC GACGATCACT GATTGAAAAA
GAAAGCCAAA TGTATGGCTC GATGGATGGC GCGATGAAGT TCGTTAAAGG CGACTCCATT
GCTGGTTTGG TCATCATTGT GGTCAACATC TTAGGTGGCG TCACGATCGG GGTAACGCAA
AAAGGCATGA GTGCTTCTGA AGCGCTTGAG CTGTTTGCGA TTTTGACCGT TGGCGATGGT
TTGGTGTCGC AAATTCCGGC TCTGTTTATC GCGATTACGG CTGGTATTAT CGTGACGCGT
GTTTCTCATG AAGACTCTTC TGATCTTGGT TCGGACATTG GTGGGCAGGT CATTGCTCAG
CCACGTGCGC TTCTTATTGG CGGTGTGCTT TTGGTGCTCT TCGCACTGAT TCCTGGTTTT
CCAAAAATTA CTTTTCTGGT CTTGGCCACA GTGGTTGGTG GTGGTGGTTT CTTCCTTTTC
TATCAACAGA AAAAACAGGC TGCATCAGAT ACTACCGACT TATCAAGCTT TGTTTCGCAA
GGGGCGGGTT CACCAGCAGC GAAGCCAAGC AAACCAACCC CATCTAGAAA CAGTAAAGGC
AAATTAGGTG AGCAAGAAGA GTTCGCCATG ACGGTCCCAC TCTTAATTGA TCTTGACGCG
AGCCTTCAGG AAAGCTTGGA AGCGGTCGCA TTGAATGAAG AGCTAGCAAG GGTGAGGCGC
GCACTATATC TCGACCTCGG CGTGCCTTTC CCGGGTATCC ACCTGCGTTT TAACGAGGGG
ATGCAAAATG GCGAATATTT AATTCAGTTA CAAGAAGTTC CGGTTGCACG AGGACGAATT
GTAAAAGACC AACTTTTGGT GACAGAAGGG AATGAGCAGA TCGACTTATT AGGCGTGCCT
TATGAGCAAG ATGAAGATTT TCTACCCGGT ATTTCTAGCA TTTGGGTGGC ACAAAGTTAC
GAGCAAAAAC TCACCACTAG CCATGTCGGC TTTCTCACAC CCGACAGAAT TTTAACGTAC
CACTTGTCTC ATGTTCTCAA GGAGTACGCA CAAGACTTTA TTGGTATTCA GGAGACGCGT
TATCTGTTGG AGCAGATGGA AGGTAGTTAT TCGGAGCTAG TTAAAGAGGC CCAGCGCATT
GTCCCGTTAC AAAAAATGAC GGAAATCTTG CAACGCTTGG TTTCTGAAGA CATTTCCATC
CGAAACCTTC GCGTGATCTT GGAAGCCATG GTTGAGTGGG GCCAAAAAGA GAAAGATGTT
GTACAGCTGA CGGAGTACAT TCGTTCCAGC TTAAAACGTT ACATTTGCTA CAAATACGCG
AGTGGACAAA ACATGTTGCC CGCTTACTTA TTGGATCAAA GTCTCGAAGA CACAATACGC
AGCGGTATTC GTCAAACCTC TGCAGGAAGT TATTTAGCGT TAGACCCGTC TGTAACTCAA
CAATTTGTGA GTGATGTGAA ACAGACCATC GGTGATTTAA GCCGCATGCC GAATAAGCCT
GTGTTAGTTG TGTCTATGGA TGTACGCCGA TATGTGCGAA AGCTTATTGA ATCGGAATAC
TACGATCTGC CCGTTTTGTC ATTTCAAGAA TTAACCCAGC AAATCAATAT TCAGCCACTT
GGAAGGGTGG GGATGTAA
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| Protein sequence | MNKLIDILNK VGQRKDIMLA VMLLAIVFMM ILPLPTALVD VLIGTNMSIA VVLLMLAIYI
TTPLEFSAFP AVLLITTLFR LSLSITTTRL ILLQGDAGQI VYTFGNFVVG GNLVVGIVVF
LIITIVQFMV ITKGSERVAE VSARFSLDAM PGKQMSIDGD MRAGVIDVHE ARHRRSLIEK
ESQMYGSMDG AMKFVKGDSI AGLVIIVVNI LGGVTIGVTQ KGMSASEALE LFAILTVGDG
LVSQIPALFI AITAGIIVTR VSHEDSSDLG SDIGGQVIAQ PRALLIGGVL LVLFALIPGF
PKITFLVLAT VVGGGGFFLF YQQKKQAASD TTDLSSFVSQ GAGSPAAKPS KPTPSRNSKG
KLGEQEEFAM TVPLLIDLDA SLQESLEAVA LNEELARVRR ALYLDLGVPF PGIHLRFNEG
MQNGEYLIQL QEVPVARGRI VKDQLLVTEG NEQIDLLGVP YEQDEDFLPG ISSIWVAQSY
EQKLTTSHVG FLTPDRILTY HLSHVLKEYA QDFIGIQETR YLLEQMEGSY SELVKEAQRI
VPLQKMTEIL QRLVSEDISI RNLRVILEAM VEWGQKEKDV VQLTEYIRSS LKRYICYKYA
SGQNMLPAYL LDQSLEDTIR SGIRQTSAGS YLALDPSVTQ QFVSDVKQTI GDLSRMPNKP
VLVVSMDVRR YVRKLIESEY YDLPVLSFQE LTQQINIQPL GRVGM
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