| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003362 |
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| Symbol | |
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| ID | 8557095 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | - |
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| Start bp | 1919811 |
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| End bp | 1920461 |
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| Gene Length | 651 bp |
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| Protein Length | 216 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646406457 |
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| Product | yop virulence translocation protein R |
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| Protein accession | YP_003285987 |
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| Protein GI | 262394133 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4790] Type III secretory pathway, component EscR |
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| TIGRFAM ID | [TIGR01102] type III secretion apparatus protein, YscR/HrcR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATCCAGT TACCCGACGA GCTCAATCTC ATTGTCAGCT TAGCACTGCT GGCACTGATC
CCATTTATCG CCATGATGGC GACGTCGTTT GTGAAACTCG CCGTTGTATT CTCACTGCTG
CGTAACGCTC TCGGTGTACA GCAAATTCCG CCGAATATGG CGCTTTACGG ATTGGCCATC
ATTCTGTCAA TTTTCATCAT GGCTCCCGTC GGGTTTGAAA CCTACGACTA CGTAAAGCAG
CATGATATCT CCCTTGAAGA TTCTGCAAGT GTAGAAGGCC TCATTGAAAG CGGTTTACAG
CCTTATCGAG AATTTTTGAA AAAGCATATT CGGGAAACCG AAGCCATATT CTTCACTGAT
GCTGCACGCA CATTGTGGCC ACAGAAGTAC GTAGACCGTT TAGAGTCAGA TAGCTTGTTG
CTGTTGCTGC CAGCGTTTAC GGTCAGTGAG CTTACCCGTG CTTTTGAGAT TGGCTTTCTA
TTGTACTTGC CGTTCATCGC TATCGACTTA ATTGTTTCGA ATATCTTGCT CGCCATGGGC
ATGATGATGG TATCGCCAAT GACCATCTCT CTCCCTTTCA AATTGTTACT CTTTGTCTTG
CTTGACGGCT GGACGAAACT CACTCACGGC TTAGTACTGA GTTACGGTTA A
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| Protein sequence | MIQLPDELNL IVSLALLALI PFIAMMATSF VKLAVVFSLL RNALGVQQIP PNMALYGLAI
ILSIFIMAPV GFETYDYVKQ HDISLEDSAS VEGLIESGLQ PYREFLKKHI RETEAIFFTD
AARTLWPQKY VDRLESDSLL LLLPAFTVSE LTRAFEIGFL LYLPFIAIDL IVSNILLAMG
MMMVSPMTIS LPFKLLLFVL LDGWTKLTHG LVLSYG
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