Gene VEA_003337 details

Gene Information

• Locus tag: VEA_003337
• ID: 8557070
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio sp. Ex25
• Kingdom: Bacteria
• Replicon accession: NC_013456
• Strand: +
• Start bp: 1899001
• End bp: 1900815
• Gene Length: 1815 bp
• Protein Length: 604 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 646406432
• Product: type III secretion system outer membrane pore YscC
• Protein accession: YP_003285962
• Protein GI: 262394108
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1450] Type II secretory pathway, component PulD
• TIGRFAM ID: [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGCTTTG CTCCGTTGGG ATTCGCACAA GCAACAGACT TACACTGGCC CGAACAACCA 
TTCCGATACT ATGCAGATAA CGACTCATTA AAAGAGTTGT TGAATAACTT TGGCGCAAAC 
TATCGCGTTT CGGTTTCTGT GAGTGACAAA GTTAATGATC GAGTGAGTGG ACGTTTTACT 
CCTGATGATC CGGCTGAGTT CCTCGACTAC TTATCGCAAG TCTATAACTT GATGTGGTAT 
TTCGATGGTG CCGTCTTACA TGTCTATAAG GCGACAGAAA CGCGCTCACG TTTACTCCAA 
TTAGAATTAT TGACCGCCAG AGAGCTACGA AGCACGTTAA TTTCCACTGG AGTGTGGGAT 
TCGCGCTATG GGTGGAGGGC CGCTGAGAGT AAAGGGTTGG TTTATCTTGC AGGTCCTCCA 
CGTTATGTCG ACTTAGTTGT ACAAACGGCC GAAGCATTAG AAACGCGCCT GCTGCAGAAA 
TCGAATTCAA CCGACGAGTT ATTCGTTGAA ATAATTCCTT TGAAGTACGC TTCTGCAACG 
GATAGAGAAA TTGCATATCG AGATCAGACC ATTACGGTTC CGGGTATCGC ATCGGTTTTA 
AAGCGAGTCG TGTCTGGTGT TCAAACTCAA GTGACGAGTG CGTCGAACAA AGAAGTTACC 
AGTTCAGATA CGCCTGTAAA AAGCAATAAA ACCGCCTCAG TTCATGGCGG AGCAACGGTT 
GAAGCAGAGC CGGGCCTTAA TGCGATTATT GTTCGTGATA CTCAAGCGCG ATTACCGCTC 
TATCGCAAAC TGGTCGCTCA ATTGGACCAA CCGCAATCAA GAATTGAAGT TGCGTTATCG 
ATTGTCGACA TCAGTGCCAA CGATTTAAGT CAGTTAGGCG TGGATTGGCG AGCGGGAGTG 
TCTGTCGGAA ATAATCGAAT TGTTGATATC AAAACAACAG GGGATGTGAG TTCGGGTGAT 
GTGACTCTCG GCAGCGGACA AAATTTTAAG TCTTTGCTTG ATTCAACCAA TCTGAATTAC 
CTGTTGGCTC AAATCCGTTT ATTGGAATCT CAAGGCAGTG CTCAAGTGGT TTCAAGACCA 
ACACTGCTAA CCCAAGAAAA TGTCGAAGCT GTACTGAACA ACAGCAGCAC GTTTTACGTC 
AAGCTGGTTG GTAAAGAGAC CGCAGCACTG GAAGAGGTCA CGTACGGCAC GTTACTGAGA 
ATTGTCCCGC GTATCGTTGG TGACAGGTTT GCTGCCCGAC CAAAAATCAA TCTGAGCCTT 
CATCTCGAAG ACGGGGCAAA GATTACCGAT GGTGGTGTCG ACGACCTTCC TTCCGTTCGT 
AAAACTGAAA TCAGTACCTT GGCGACGGTG AAGCAAGGAC AGAGCTTGCT CATCGGTGGT 
GTTTATCGAG ATGAAGTGAG TCATCAGTTA CGTAAAGTAC CACTGTTGGG AGACATCCCA 
TATTTAGGTG CGTTGTTTAG AAGTAATACC AACACTAAAC GCCGCACGGT GCGCATGTTT 
ATTCTAGAAC CGCGAATCGT TGTGGATGGT ATTGGCGATA GTGTGTTGAT TGGTAATGAG 
TACGATCTGC GACCAAGCAT TGGCAAGCTC AACAACATTT CCAACAACAG TGCTGAATTT 
AAATCGGTCG TCGAAGTGTA TAGCTGCACA TCAAAGACTC AAGCAGAGCG CTATCAGCAA 
GACTTATTGT CACAGCAACA GTCGTCTCAA TTGACGCAGT GCCAATTGCC GACAGGGCAA 
AAGGGTTGGC GTGTAAAAGT ATTGGAATGC GATGACTCAC AAAGTGAGTG TGTGCATCCA 
TCAGAGGAGC CTTAA 

 

Protein sequence

MSFAPLGFAQ ATDLHWPEQP FRYYADNDSL KELLNNFGAN YRVSVSVSDK VNDRVSGRFT 
PDDPAEFLDY LSQVYNLMWY FDGAVLHVYK ATETRSRLLQ LELLTARELR STLISTGVWD 
SRYGWRAAES KGLVYLAGPP RYVDLVVQTA EALETRLLQK SNSTDELFVE IIPLKYASAT 
DREIAYRDQT ITVPGIASVL KRVVSGVQTQ VTSASNKEVT SSDTPVKSNK TASVHGGATV 
EAEPGLNAII VRDTQARLPL YRKLVAQLDQ PQSRIEVALS IVDISANDLS QLGVDWRAGV 
SVGNNRIVDI KTTGDVSSGD VTLGSGQNFK SLLDSTNLNY LLAQIRLLES QGSAQVVSRP 
TLLTQENVEA VLNNSSTFYV KLVGKETAAL EEVTYGTLLR IVPRIVGDRF AARPKINLSL 
HLEDGAKITD GGVDDLPSVR KTEISTLATV KQGQSLLIGG VYRDEVSHQL RKVPLLGDIP 
YLGALFRSNT NTKRRTVRMF ILEPRIVVDG IGDSVLIGNE YDLRPSIGKL NNISNNSAEF 
KSVVEVYSCT SKTQAERYQQ DLLSQQQSSQ LTQCQLPTGQ KGWRVKVLEC DDSQSECVHP 
SEEP