| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003253 |
|---|
| Symbol | |
|---|
| ID | 8556986 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | - |
|---|
| Start bp | 1821187 |
|---|
| End bp | 1822533 |
|---|
| Gene Length | 1347 bp |
|---|
| Protein Length | 448 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 646406348 |
|---|
| Product | phage integrase |
|---|
| Protein accession | YP_003285878 |
|---|
| Protein GI | 262394024 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0582] Integrase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTATCA ATAAATTAAC AAATACACAA ATCAAGAATG CAGCGAAAAG TGACAAAGAA
TATTCACTAT CAGATGGTGG AAATCTCTAC CTAAGAATAC GTAAAAACGG CTCTAAAAAC
TGGTTATTTA TCTACACAGA CTTTAGCACT AAAAAGCGTA AAAAAATGGG GCTTGGCTCA
TACCCTAATA TGACGCTGGA CGAAGTACGC AAGGTCGCTA AAGAGCTTCG TAAGCAAATG
ACGAAAGGCA TTGACCCAAA GCTGTTTCGT GAAAAGCAGA AGTTAGACCG TTTGGTTGAA
AGCCAACTGA CCTTTAAAGC GATAGCAGAA AAGATGCTTC TGAAAGAAGA AATTCAAGAG
ACCACTAACC GAGAAAAGCT GATTGTCGAA GAACGTGAGA GGGCTAGAAT TAAAGGCACG
GTATTCGGGC AAGATGAAAT CGACCGCATC ACCAACAAAG TGCGCTCGTC ACATCGCAAG
CGTCTTTTCT TAAAACGTAA CCTATACCCT AAACTAGGCA ACCTCCCCCT AACCTATATC
ACTGCCGCTG GAGTCATTTC GGTCATCGAA CCTATGCAGG CTAAAGGACA ATTAGAAAAT
GTAAAACGTG CATGTTGTAT TGCCAATCAA GTGATGAAAT TCGCGGTAAA CTCAAACATC
ATTAAATCTA ATTGCTTAGC CGACATTAAA GACAACTTTG CCAAATCAAA AGTCACTCAC
ATGCTCAAAG TACCGCCAAA CGAACTTGGT GAAGTGATGG CTATCATGTC AAACAACCAA
ATGAAACCCG TCACCCGTTG CGCGTTCGAA ATGCAAATGC ACACGATGGC TCGCGCAGAT
GAACTCGCTG CCATGCGCTG GTGTGATATC AACGTTAAGA ATAAACTTTG GACAATCCCA
GCGTTCTACA CCAAAGGCAA ACGTGAACAT TTAGTGCCGC TGAATGACTA CACGTTAGGG
ATATTAGAGT TCATTCGACC AATATCAGGA GAGCACATCC ACGTATTTCC ATCTGACAAG
CCTAATACCA AATTCCCGCA CATAAGTCCT TACGCCGTGA ATTCATCACT CAACCTCACT
AGTTTGAAAG GCAGGCTCGT CAGTCATGGG TTTAGGGGCA TTGCTAGCAC GTATCTCAAT
GAACACAAAC AATTCCGTGA AGATGCCATT GAAATGTGTC TTGCTCATTT AGATAAGAAC
ACCACTCGAG CTTCATACAA CAGTGCGTTG TATCTCGATG AACGATACGA AATTCTTCAA
TTCTGGAGCG ATTATATTGT GGAATCGACA GGCAACTACT ATTCGATTGC AGGACAATAT
CAAGCGGAGA ATAAACAGAG CGCATAA
|
|---|
| Protein sequence | MAINKLTNTQ IKNAAKSDKE YSLSDGGNLY LRIRKNGSKN WLFIYTDFST KKRKKMGLGS
YPNMTLDEVR KVAKELRKQM TKGIDPKLFR EKQKLDRLVE SQLTFKAIAE KMLLKEEIQE
TTNREKLIVE ERERARIKGT VFGQDEIDRI TNKVRSSHRK RLFLKRNLYP KLGNLPLTYI
TAAGVISVIE PMQAKGQLEN VKRACCIANQ VMKFAVNSNI IKSNCLADIK DNFAKSKVTH
MLKVPPNELG EVMAIMSNNQ MKPVTRCAFE MQMHTMARAD ELAAMRWCDI NVKNKLWTIP
AFYTKGKREH LVPLNDYTLG ILEFIRPISG EHIHVFPSDK PNTKFPHISP YAVNSSLNLT
SLKGRLVSHG FRGIASTYLN EHKQFREDAI EMCLAHLDKN TTRASYNSAL YLDERYEILQ
FWSDYIVEST GNYYSIAGQY QAENKQSA
|
|---|
| |