| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002379 |
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| Symbol | |
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| ID | 8556074 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | + |
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| Start bp | 845551 |
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| End bp | 846114 |
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| Gene Length | 564 bp |
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| Protein Length | 187 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646405437 |
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| Product | MSHA pilin protein MshD |
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| Protein accession | YP_003285006 |
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| Protein GI | 262393152 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0263515 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACGATGA AATGCAAAAA AACGCCTCGA GGAATGACGC TTATTGAGAT GATTATTGCG
ATCGTCTTAA TGGGAATCGC AATGGTGATG TTTTCGACAG CATTGATACC ACAAATTAAA
GATGCTTCCA CCTCCCATTA TCAAAGTCGA GCCATTTCTT TAGGGCATAG TATGATGTCG
CAAATTTTGG CCCGTAATTT TGACCATTAT TATGATGACA ACGGTGGCAT GCTCCGCTGC
GGCGAAAGCG GGGCAGACGC TTGCTCACCT CTTGGAAGAG ATGGAGAGAC TTCGCCCTCT
GCTTTTAATG ACGTTGATGA TTATATTGGT TGTTGGTACA CCGAAAATAC TCAGAATAGT
TGTCCGTCAG GTAGCGAAAA ATACCAACTC TCAGATGTTG TAGGTAATAG TGCAGACAGT
AGTTATATCA ATTTTCGTGT AGAGGTTGCG GTAGAAACGA CAGAGCTCGA AGGAAGTGTC
CCTAAAATGA AACAAGTGAA GCTAGATGTA TTTGCTGGTT CCGCGTTAGC GATTTCATTG
GTTGGTTACA GAGGTAATTA TTAA
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| Protein sequence | MTMKCKKTPR GMTLIEMIIA IVLMGIAMVM FSTALIPQIK DASTSHYQSR AISLGHSMMS
QILARNFDHY YDDNGGMLRC GESGADACSP LGRDGETSPS AFNDVDDYIG CWYTENTQNS
CPSGSEKYQL SDVVGNSADS SYINFRVEVA VETTELEGSV PKMKQVKLDV FAGSALAISL
VGYRGNY
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