| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_5513 |
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| Symbol | |
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| ID | 8547926 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | + |
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| Start bp | 7560465 |
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| End bp | 7561742 |
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| Gene Length | 1278 bp |
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| Protein Length | 425 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 646390186 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_003269889 |
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| Protein GI | 262198680 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.568849 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCACT TCGCCTATCG CGACGACGAG CTGTACTGCG AAGACGTGCC GCTGGCGCGC
ATCGCCGACG AGGTCGGCAC CCCGGTCTAC GTCTACAGCC ACGCCACGCT CACCCGTCAC
CTGCAGGTGT TCGACGCGGC GCTGAGCGGC GTGCCGCACC TGGTGTGCTT CTCGGTCAAA
TCCAACCCCA ACCTGGCCGT GCTGCGGCTG CTGTTTCAGC TCGGCGCCGG CGCCGATATC
GTCTCCGGCG GCGAGCTGGC CCGCGTGCTG CGCGCTGGCG GCGATCCCGC CAAGGTGGTG
TTCTCGGGCG TGGGCAAGAC CGACGCCGAG ATCGCGGCCG CCCTGCGCGC CGGCATCCTG
GCCTTCAACG TCGAATCCGA AGAGGAGCTG CACGCCATCG ACGCGGTCGC CGCCGACATG
GGCGCGCGCG CGCCGGTGTC GCTGCGCATC AACCCCGACG TCGACGCCCA GACCCACCCG
TACATCGCCA CCGGCCTCAA GGAGAGCAAG TTCGGTATCG CCATGGCCGA GGCCCGCCGG
GTCTACGCGC TGGCGCGGAC CCTGGCCCAC GTCGACATCG TCGGCGTCGA TTGCCACATC
GGCTCGCAGC TCACGCGCAC CGATCCGTTT TCGGACGCGG TGTCGCGGTT GCTCGGCCTC
ATCGAGGAAT TGCACGCCGA CGGCGTGGCC CTGCGCTACC TCGACATCGG CGGCGGCCTC
GGCATCCCCT ACGAGGGCGA CGGCGCCGCG CCTCCGCCCT CGCCGGCCGA ATACGGCGAC
GCCATCAAGA GCGCGCTGGC GCCGCTGAAG CTGCCCACGC CGCTCACCAT CATCTGCGAG
CCCGGCCGCG TCATCACCGG CAACGCCGGC GCCCTGCTCA CCCGCGTGCT GTACCGCAAA
CACGCCGAGG CCAAGCACTT CACGGTCGTC GACGCGGCCA TGAACGACCT CATCCGGCCC
TCGCTCTACG GCTCGTATCA TCCCATGCGC CCGGTCGTGC GCGCGGCCCA GCGGCCGCAG
CAGGTCACCG ACGTGGTCGG CCCGATCTGC GAGTCGGGCG ATTTCCTCGC CCGCGATCGC
GAATTGCCCG CGCTCGAGCG CGGCGAGCTG CTCGCCATCG GCGCGGCCGG CGCCTACGGC
TTTGCCATGG CCAGCAACTA CAACAGCCGC CCGCGCGCCG CCGAGGTCAT GGTCCGCGGC
GACCGCTTCG CCGTGGTCCG CGCGCGCGAG AGCGTCGAGC AGCTCTTCGC CGACGAAGCG
ATCCCGGACA TGATCTGA
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| Protein sequence | MNHFAYRDDE LYCEDVPLAR IADEVGTPVY VYSHATLTRH LQVFDAALSG VPHLVCFSVK
SNPNLAVLRL LFQLGAGADI VSGGELARVL RAGGDPAKVV FSGVGKTDAE IAAALRAGIL
AFNVESEEEL HAIDAVAADM GARAPVSLRI NPDVDAQTHP YIATGLKESK FGIAMAEARR
VYALARTLAH VDIVGVDCHI GSQLTRTDPF SDAVSRLLGL IEELHADGVA LRYLDIGGGL
GIPYEGDGAA PPPSPAEYGD AIKSALAPLK LPTPLTIICE PGRVITGNAG ALLTRVLYRK
HAEAKHFTVV DAAMNDLIRP SLYGSYHPMR PVVRAAQRPQ QVTDVVGPIC ESGDFLARDR
ELPALERGEL LAIGAAGAYG FAMASNYNSR PRAAEVMVRG DRFAVVRARE SVEQLFADEA
IPDMI
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