| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_4083 |
|---|
| Symbol | |
|---|
| ID | 8546484 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | + |
|---|
| Start bp | 5615048 |
|---|
| End bp | 5615935 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 646388759 |
|---|
| Product | protein of unknown function DUF6 transmembrane |
|---|
| Protein accession | YP_003268474 |
|---|
| Protein GI | 262197265 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5006] Predicted permease, DMT superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.221169 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.153561 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCAGG ACTCGCGCGC GTCCGCCGCG GTTCGCGCCG TGTGGCGGCT GCTCGCCGGC
GCCGTGCTGA TCAGCTTCGC GCCGGTGTTC GTGCGCCTGG TCGACGTCGC GCCGACCGCG
AGCGCGTTCT ACCGCACCGG CATCGGCGGC GTGGTGCTGC TGCTGTGGAC CCTGGCCCGC
GGCCGCTCGC TGCGCATCGG CGCCCGCGCC GCGCTGGCCG TGGCCGGCGC CGGCCTGGCC
TTCGCCGCGG ACCTGGCGCT GTGGCACCGC AGCATCCTGT ACGTCGGCCC GGGGCTGGCC
ACGCTGCTGG CCAACTTCCA GGTCTTCGGC CTGGCCATCG TCGGCGTGTT CTGGTTTGGC
GAGAAGCTGC GCGCGCGCCT GCTGCTATCG ATCGTCCTGG CCGTCGTCGG CCTGGGCCTG
ATCGTCGGCA CCGACTGGGC GGAGCTGGGC GCCGAGGCCC GCCTCGGCCT GCTCTTCGGC
CTGGGCACGG CCGTGGCCTA CGTCGCCTAT ATCCTCTGTC TGCGCCGCGC CGGCAACGTC
GGCCGCGACC GCATGCCGGG GCGCGATCTC GCCCTGGCCT CGCTGGTCTC GGCGCTGTGC
CTGCTGCTCG GCAGCGGCCT CGACGGCGCC GCGCTCGCCA TCCCCAGCGC GGGCGACGGC
GCCCTGCTGG TGGCCTACGC GCTCACCGCG CAGGTGCTGG GCTGGATCCT CATCTCCAGC
GCGCTCGAGC ACGTGCCGGC CTCGCGCGTG GGCCTCATCC TGCTGCTGCA ACCGTCGCTC
GCCTTCGTCT GGGACGTGCT GTTCTTCGCC CGCCCCTTTG GCCCGCGCGA GGCCCTGGGC
GCCGCCCTGG CCATCGCCGC CATCTACCTC GGCAACAGCA AACGCTGA
|
|---|
| Protein sequence | MDQDSRASAA VRAVWRLLAG AVLISFAPVF VRLVDVAPTA SAFYRTGIGG VVLLLWTLAR
GRSLRIGARA ALAVAGAGLA FAADLALWHR SILYVGPGLA TLLANFQVFG LAIVGVFWFG
EKLRARLLLS IVLAVVGLGL IVGTDWAELG AEARLGLLFG LGTAVAYVAY ILCLRRAGNV
GRDRMPGRDL ALASLVSALC LLLGSGLDGA ALAIPSAGDG ALLVAYALTA QVLGWILISS
ALEHVPASRV GLILLLQPSL AFVWDVLFFA RPFGPREALG AALAIAAIYL GNSKR
|
|---|
| |