| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3901 |
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| Symbol | |
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| ID | 8546297 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | - |
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| Start bp | 5371899 |
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| End bp | 5378606 |
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| Gene Length | 6708 bp |
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| Protein Length | 2235 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 646388573 |
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| Product | Tetratricopeptide repeat protein |
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| Protein accession | YP_003268293 |
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| Protein GI | 262197084 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0305093 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAAGA AGTCGGACAA CCGGACGGGA TTTCCCGGGG GCGGCGATCA CGACGAGCTC
GACGCCGCCT TTGATGACTG GGACGATAAG TTCGACGGTC TCTTTGCCGA GCCCACGGGC
GTCGATGGTG AGCGGGCGGC CGACGAGCGC CGGGCTGCTG CTGCGCCAGC CGCGACCGCC
GAAGCCGGGA CCCGCGACGA GGGCGACGAG CAGGACGAGG GCGAGGATCT CGAGATCGAA
ATCGGGGACG CGGCCGACGC GGAGGCAGAG GGCGACGATC TCGAGATAGA AATCGGGGGC
GCGACCGACG CGGAGGCCGG GCCTGGGTAC GAGTTCGAGC TGTCGGTGGA CGATGCCTCC
GACGTCGAGC CGGATATCGA GATCGCGTTG GACGCTCCCG AAGCGCTCGG CGGACTGCTC
GGTCCGATGT CCGATGTCGT GCTCGACGAT ATCGACGACG GCGACGCCGA GTCGCTCCCG
CCGCCCTTCG AGCAGGATTC GGGGGCCTTC GAGCTGCCGC CCGAGCCCGC GCCCGCGCCC
GGGTCCGAGG ACGAGGACGA GGTGTTCACC TCGGCGCTTC GGCCGCGGCG CGAGAGCACA
CCGCCGCCCG TCGCGCAGCC GGCGGGTCGG CCGCGCTACA AGTCGGTGAT GTCTGCGTTC
GAGTCGGTCG CCGACGAGGC CGATGATGAC GATGACGACG ACTTCGATCC CTTTGCCGAG
CCCGGCGAGG GCGCTTCGTC GCAGGTCACC AAGGTGGTCG AAGTCGACGA GTCGTTGCTC
GCGGCCGCCG TCCCCGGCGC CGACACCAAG AAGCGGCGCA CGCGCGCGCC GACCATCGTA
CGCCGCGACG AGCTTGAGCG CCTGCGCGCC GAACGCGCGG CGCTGCGCAT GGCCGGGGAC
GACGACGACG ACGATGATGA CGACTTCGGC GGCGGCAACA CGCAGCTCCT CAGCCAGGAG
CAACTCGAGA GCCTGGCCGA CAAGAGCGCG GCCGAGGCCC CGGTGGTCGC GGTGGATGCC
GACTTCTACG ACGACATCGT CATCGATGAC GCGGCTGACA AGCCCGAGGG GGAGGGCGAG
GGCGTCGAGA TCGAGATGCA GGTGGATGCG CCCGTGGTGC CGCCCGGCCG GCGCGTCTCG
GCGCACGTGG TGCGGCGCGA CTCGCTCAGC GGGGTGGGCG GCGAGGCTCA TCCCAAGCCG
GTGCCGCGCG CGCGCCGACG CCGTTCGCGC AACTCCGAGC AGGAACTGGC CAGCTATCTC
GAGGGCTCGC GGGCCCTCGA TCCCGAGAGC ACCCTGGATC TGCGCAAGGC CGTCGAGGAT
GCGCGCGAGC CCGGCGCCGA GCCGTCGACG CGGCAGCGCT CCGAGGAGAT CCAGGCCATC
ATCGACCGCG CGGCCGAGGA GTTGCGCAGC CAGCGCGCCG ATCGCGATGA GACCGCGCCG
CCCGTGCTCG ACCCCGGCGA CGTCGCGCTG CCAGAGGACT CGTTCGAGGA CTTCGAACTC
GACTGGGAGA CCGAGCCCGC GACCAAGCCC GCGGAGACCG CGCTGCGCCC CGACGCCACC
GCGGCGATGG CGCGACGCGA CCCCGACGCC GAGGCGCTGT ACCTCGGCCT GCCGCCGGCG
GTGCTGCCGA CCGGAGCCGA TGAGGACTGG CCGGCGCTCG CCATCGGCAC GCTGTCGCTG
CCGGCCGAGA GCCCCGCGCA GGAGCCCGAG CAGCGCGCTG CCACGCTCGC GAGCGCGCTC
TTGCGCTACG AGCGCGTGCT GGCGGATCCG GGCACCGGGG AGGCGGCCGC GCGCATGTTC
CTGGTCGCCG GACAACTGTC CAGAAACTTG GGCGCTCTCG ACGATGCGCG CACGCACTGC
GAGAGCGCGC TCGAGCACGC GCCCGGCTCG CTGAGCGCGG CCCGCGAGCG CCGCCGCGTC
GCGCTGTTGC AGGGCGAGCT GCAGACGCCG CTGCAGGCCC TCGAGGCCGA GCAATTGCGG
CTCGAGAAGG TCGAGCAGCA GGCGCTGGGG CTGTATCGCC TCGAGGCGGC GATGGCCCAC
GGCGAGCGCG AACTGGCCGC CGGCGAGATG GCGGCCCTGG GGGATGATGG CGCCGGCGCG
CGCCGAGCGC TGGCGCAATT CGAGTTGGCG CTGGCGCGGG GCGAAGACGC CGAAGCGGCT
GCGGCGCTCG CGGTGCTCGC GCGCACGCTC GAGGCTGACG CCAGCGCCGG TGACGCCGCC
TTGGCCAACG CGCTGGCGCG GGTCCACTGC CTGTTGGAGG AGCGCGGCGG TGGCGACGCC
GCGAGCGGTT TCATCGCGGT TGCGAGCGCT GGCGCGTCCA CGGCTTGGCT GAGCGCTGCG
GCGGCCGCAC GACGGCACGA AGACGGTGTG CACCGACTCG CGCAGCACGG CGCCGGGACG
CCGCTTGACG AGTCCGAGCC GGGGACCGAG GCCTTTGCCG CAGCGCTGGC GTGGCGGCGA
TCGCTGTGGA GCGAGGCGGC CGGCGCCGAG AGCGAGCGCG CGCACGCCTT GCAAGTGGCG
GCCGCGCAGG CGCCGGGGCA GGCGTTCCTG GTCGCCGAAG CTGCCGCCCT GGCAGCGGCC
TCGGGGCAGC ACGAGCGCGC GGCCCAGCTC TATCAGCAGC TCGCCGGCGC TGCGCCCACC
GAGGCCGAAC AGGCGATGGG GCTGGCCCGG GCAGGGCGCC ACCTGATCGC GCTCTCGCGC
GACGACGAGG CCGTGCGCGT GCTCGAGCGA CTGCGCATGC TCGAGCCCTC GGATCCCGCG
ACCGTGTTGG CGCTCGAGCC GGTACTCGAA CGACTGGACG ATCTCGACGC GCTGATCGCG
CTCGACGGCC AGACCGTGGC CGCCAATCCC GAGGGCAGCG TGTTCGAACG CGTGCGCATG
GCGCGGCGCA TGGCGCGCAG CGGTCGCGAA GACAAAGCCA TCGCCGAGAT CGAGGCCGGT
CGCATGTTGG CGCCCGAGGA TCCGGCGCTG CAACAAGCGC TGCTCGACTT TCTCGACCGC
TCGCAGCGCA CGCACGTGCG CGCCGGCGTG CTCGCCGGTT TGGCCGAGGA GGTCGGCGCC
GTGCTCGGTC CGGACACCGC CTCGTGGCGC GCGGCCTTGG CCTACGACGC CCACGCGCGC
GAGGTCATCG CCAGGCAGGA GGCGGGCGAG GCCGCGGGGG AGGCAGCCGA GCCGCTGCGG
GCGCTGCGCG AAGGCGCTCT GGCCAGCGCG CTCGAGGCCT GGAATCGCGT GCTTGACGAC
GAGCCCGATT CCGCGGGCGC GCACGTGGCC AGCATACGCC TGGCGCAGAT GCTCGGCGAC
GACGACGTCC TCGACGACGT CCTGGCGCGT GCGCAGAGCG TGATCCACGA TTCCGGACAT
GCGGCCGAAA TGGCGCTGGC GCGCGTGGTC GCGGCCACGG GGCGTCCGGG CCGTCCGCCC
GGCGACGACC CCGAGGGGCT CGAGCACCTC ATGCGCGAGC TGGCCACGCT GGCGCCCGAG
GATCCGCGGC CCGCGTTCGT GGGCGCGCTT CTGGCCGCTG CCGACGAGCG TCCCATCGAT
GCCGCCCAGG CCTACGAGGA GCGCGCCATG GCGCTCGGCG AGGGCGCGCG GGCGGCCGTG
ATGCGCTACC GGGCCGCGGC CCTGTATCTC GAGCCCGGCG ACGACGCCGG TCACGCGGCC
GTGCTCTTCG ACGAGGTGCT GCGCGTTGCG CCCGCATGCG CGCCCGCACA AGAGCTGCTG
CGCTCGGCCC GCATGCGCAC CGGCGATATC TCGGTGAGCA TGGCGTTGCC GACCGCGCCC
GGGGCTGGGG ACGAGGCCGA GAGCGCGACC AGCGCGGCCG TGCGCGGCGC TGGCGAGGAT
GACTTCGCGC GTGTGCTGCG CGAGGCCGAC GCGTGTCTGG GACCCCTGGG CGAGCCAGAG
CGTGCGCTGG GCTTGTACGA ACAAGCGCTG CACGTGCGTC CAGAGGACGA CGACGCGCGC
CGCCTGGTCG CGTTTGGTCT GCGCCAGGCG GCGCTGCGCG CGCCCGCGCT CGAGCGCTGG
ATCGCGCATC TCGAGACCTC GCTGCAGGCG GCCAGTGAGC GCGCTGACGA CAGCGCTGTG
GCCGCTTGCC ACGATGCCTT GGCGCGGGCG AAGTTCCGCG TGCAGGCACC CAGGGACGAG
GTGTTTCGGC ATCTGAACGC CGCCGCCACG GCCGCGCCGG GCCGGCCGGA GCTGCGTCGG
GCGGTCGAGC GCGCGCACAT CGAGGCGGGC CGCTGGGATG CGCTGCTCGC GCTGTACCGC
AGCGCGCCGC CGGGGACGGT GCGTGAGGAG GCCGCTCTGG GCCTCTCCGA GGTCCACCTC
GCCGGGATCC TGGCGCGGCC CTTCGACGAG TCGCGCGAGG TGCTCACCCG CATCACCCGC
CGCGAACCAC ACAATCTGGT GGCGCTGTTC CAGCTCGACG CGGCCGCGCG TGCGGCCTGG
GCTGCGCTGG TGCAGGGCGG CGGTGAACAC GGCGCCGACG CTGCCGAGAT CGCCGCCCGA
GCCGAGCACC TCGGCACCCT GGAGAGCGCG ACCGCGGCGG CCATGGCGCC CGATGCCCTG
GCACAGGCGG GGTTCCTCAC GCGCGCCGGT GAGAGCGCGG CCGCGGGCGG GCGCAGCGAC
GAGGCGCGAG AGCGCTTCCG CCAGGCGCTC GAGGTCGCGG AACAGGGCGA CGCGGGCGGC
TACAGCGCGG CGCTGTTTGC CTGGCGCCTG GTCGCGCTGC GGGAAGCCCT GTGGCTCGAA
CTGGCCGAGT CGGCCGAGCG CGAGGCCGCG CTGCCCGAGG CCGAAGGCGA GCAGGCCGAG
CTCGAGCATC TGGCCGCGGT CGTGCGCATG GACGCCGGCG AGGATCCGAG CGGTGCGCGC
GCGGCGCTGC AGCGGGTGCT GGCGCTCGAG CCCAGGCACG ACGACGCCTT TGCCCGTATG
CGCGCCCTGC TCGTGGGCGA GGGCGGCGAT ACCGCGGAGC CCGAAGCCCT GAGCGCGCTG
CTGCAGGCGC GTCTCGACGG CGAGGCGCAG CCCGAGATGC GCGCGTATCT GCACAGCGCA
TTGGCCGAGC TGAGCCATGG GCAGCTCGGC CAGCGAGCGC GAGCGCGCGA GCACCTGCGG
GCCGCGCTCG AGATCGTCCC CGGGTCCAGC GATTGCCTGC GTCGGCTGGC CGATCTGTGC
TGCGAGGACG GCGATTGGCA GGACGCCGCG GAGCTGTTGC TGCGCTGGGT GCGCCTCGAG
CCCGTGGTCG AGCTGCGCTG CGAGGTGTTC TTCCGACTGG GAACGCTCTA TGCCGACCAC
CTGTCCGATA GCCGCACCGC GGTCAAGGCG TTCAAGCAGG TGCTGAATCT CTCGCCCGAG
CATCGCGGCG CGCTCGCGGC GCTGGTGCGG TTCGGCGCAG AGCTCGGCGA CTACAAGCTG
GCGATCGCGG CCTGCGAGCG CCTGGTGCGC ATCTCCGAAG ATGCGGAGGC CAAGGTGCCG
CACCTCAAGC GGCTGGCCGA GCTGTACCAG GCCAGCGGTG AGGGCGGAGC GCGTGCGGAG
CGCACCCTGC GCGGGGCGCT CGACATGGCG CCCGAGAGCG ACGCCGCCTT GCGCGCGCTG
ATCGGGTTCT ATCGCAAACG CGGCGATATG CGCAGTATCC GGGTGCATCT CGACCGCCTG
GCGGGGACGA TGCGCGCCCG GATCGCCGAA CGCCCGAGCG ACGCGCTCGC CTACCGGGTT
ATCGCCCGCG CCATGGCGGT GCGCGAGGAC GCCGGTGTCG AGGGCTCGCT GGCGATCGCG
CGCAGCGCCG CGGAGTTGGC CCTGGCGCTC GACGCGGACG GTGGTGCGCT CGGCGATGGC
GGCGGCGAGC AGCCGAGTGC GGAGCGGGCG GCCGAGCTGA GCGCCGCGCT GCGCGGGCTG
GCGACGCCGT CGCCGAGCCG TCTGTCGGGC CTGCTCGAGC CCGGGGCGCA CGAGTATCTG
GCGCCTGTGC AGGTGACGCC AGCGGTGCGG CAGTTCTTCG CGCAGCTCGG CGATCGCATC
GGCAAGTACG TGGGCGCGGA GCTGCGCCGC TACGAGGTGG GGCGCGGTCA GCGGCTGCGC
GATCGCGAGG TGCCGGCCAT GGCTGTGTTC GAGTCGGTCG CTGCCGAACT GGGCGTGGAC
GCGCCGGTTC TGTATGTGTC CGATGCGCAG CCGCAGGTGT TCGCGGTGGA GCCTTCGCAG
CCTATTTCGG TGATCCTGGG CGCCTCGCTG CTGTCGTCGA TGGACGAGAA CGCGCTGCGC
TTTGCCGCCG GCAAGGCGCT GATCTGGGCG CAGACCGGGC TGGCCTCGGT GGCGCAGATG
GCCGAGCGCG ACTTCGGTGT GTTCCTGGTG GCGCTGCTGC GCCAGTTTGA GCCCGAGGTG
GAAGGGCAGG GGGTGGATAT GGCCGCGGTC GAGCGCGAGG CGCAGAAGAT GCGTCGCCTG
GTGCCGGCGA GCATGGTGCA GGAACTGCAC GCGGTCGCGC TGGGGATGAT GGGCGAGAAG
CTCGAGCCCG CCGCGCTGCG GGCCGGTATT CTGGAACTCG GCGACCGCGC CGGCCTGCTG
GCCTGCGGCA GCATCGCGAC CGCGACCTCG GTGCTCGAGC CGGGGGGCGA TGCGTCCGAG
CTGAGCGCTG CGCTCGAGCG GCCGGCGGTG GCTGCGCTGG TGCGCTACGC GGTGAGCGAC
GATCACGCGG CGCTGTTTCG CCGCTTGCGC GCCGACGGCG CTGCGTGA
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| Protein sequence | MKKKSDNRTG FPGGGDHDEL DAAFDDWDDK FDGLFAEPTG VDGERAADER RAAAAPAATA
EAGTRDEGDE QDEGEDLEIE IGDAADAEAE GDDLEIEIGG ATDAEAGPGY EFELSVDDAS
DVEPDIEIAL DAPEALGGLL GPMSDVVLDD IDDGDAESLP PPFEQDSGAF ELPPEPAPAP
GSEDEDEVFT SALRPRREST PPPVAQPAGR PRYKSVMSAF ESVADEADDD DDDDFDPFAE
PGEGASSQVT KVVEVDESLL AAAVPGADTK KRRTRAPTIV RRDELERLRA ERAALRMAGD
DDDDDDDDFG GGNTQLLSQE QLESLADKSA AEAPVVAVDA DFYDDIVIDD AADKPEGEGE
GVEIEMQVDA PVVPPGRRVS AHVVRRDSLS GVGGEAHPKP VPRARRRRSR NSEQELASYL
EGSRALDPES TLDLRKAVED AREPGAEPST RQRSEEIQAI IDRAAEELRS QRADRDETAP
PVLDPGDVAL PEDSFEDFEL DWETEPATKP AETALRPDAT AAMARRDPDA EALYLGLPPA
VLPTGADEDW PALAIGTLSL PAESPAQEPE QRAATLASAL LRYERVLADP GTGEAAARMF
LVAGQLSRNL GALDDARTHC ESALEHAPGS LSAARERRRV ALLQGELQTP LQALEAEQLR
LEKVEQQALG LYRLEAAMAH GERELAAGEM AALGDDGAGA RRALAQFELA LARGEDAEAA
AALAVLARTL EADASAGDAA LANALARVHC LLEERGGGDA ASGFIAVASA GASTAWLSAA
AAARRHEDGV HRLAQHGAGT PLDESEPGTE AFAAALAWRR SLWSEAAGAE SERAHALQVA
AAQAPGQAFL VAEAAALAAA SGQHERAAQL YQQLAGAAPT EAEQAMGLAR AGRHLIALSR
DDEAVRVLER LRMLEPSDPA TVLALEPVLE RLDDLDALIA LDGQTVAANP EGSVFERVRM
ARRMARSGRE DKAIAEIEAG RMLAPEDPAL QQALLDFLDR SQRTHVRAGV LAGLAEEVGA
VLGPDTASWR AALAYDAHAR EVIARQEAGE AAGEAAEPLR ALREGALASA LEAWNRVLDD
EPDSAGAHVA SIRLAQMLGD DDVLDDVLAR AQSVIHDSGH AAEMALARVV AATGRPGRPP
GDDPEGLEHL MRELATLAPE DPRPAFVGAL LAAADERPID AAQAYEERAM ALGEGARAAV
MRYRAAALYL EPGDDAGHAA VLFDEVLRVA PACAPAQELL RSARMRTGDI SVSMALPTAP
GAGDEAESAT SAAVRGAGED DFARVLREAD ACLGPLGEPE RALGLYEQAL HVRPEDDDAR
RLVAFGLRQA ALRAPALERW IAHLETSLQA ASERADDSAV AACHDALARA KFRVQAPRDE
VFRHLNAAAT AAPGRPELRR AVERAHIEAG RWDALLALYR SAPPGTVREE AALGLSEVHL
AGILARPFDE SREVLTRITR REPHNLVALF QLDAAARAAW AALVQGGGEH GADAAEIAAR
AEHLGTLESA TAAAMAPDAL AQAGFLTRAG ESAAAGGRSD EARERFRQAL EVAEQGDAGG
YSAALFAWRL VALREALWLE LAESAEREAA LPEAEGEQAE LEHLAAVVRM DAGEDPSGAR
AALQRVLALE PRHDDAFARM RALLVGEGGD TAEPEALSAL LQARLDGEAQ PEMRAYLHSA
LAELSHGQLG QRARAREHLR AALEIVPGSS DCLRRLADLC CEDGDWQDAA ELLLRWVRLE
PVVELRCEVF FRLGTLYADH LSDSRTAVKA FKQVLNLSPE HRGALAALVR FGAELGDYKL
AIAACERLVR ISEDAEAKVP HLKRLAELYQ ASGEGGARAE RTLRGALDMA PESDAALRAL
IGFYRKRGDM RSIRVHLDRL AGTMRARIAE RPSDALAYRV IARAMAVRED AGVEGSLAIA
RSAAELALAL DADGGALGDG GGEQPSAERA AELSAALRGL ATPSPSRLSG LLEPGAHEYL
APVQVTPAVR QFFAQLGDRI GKYVGAELRR YEVGRGQRLR DREVPAMAVF ESVAAELGVD
APVLYVSDAQ PQVFAVEPSQ PISVILGASL LSSMDENALR FAAGKALIWA QTGLASVAQM
AERDFGVFLV ALLRQFEPEV EGQGVDMAAV EREAQKMRRL VPASMVQELH AVALGMMGEK
LEPAALRAGI LELGDRAGLL ACGSIATATS VLEPGGDASE LSAALERPAV AALVRYAVSD
DHAALFRRLR ADGAA
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