Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hoch_3853 |
Symbol | |
ID | 8546246 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Haliangium ochraceum DSM 14365 |
Kingdom | Bacteria |
Replicon accession | NC_013440 |
Strand | - |
Start bp | 5302923 |
End bp | 5306099 |
Gene Length | 3177 bp |
Protein Length | 1058 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 646388522 |
Product | translation initiation factor IF-2 |
Protein accession | YP_003268245 |
Protein GI | 262197036 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0532] Translation initiation factor 2 (IF-2; GTPase) |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR00487] translation initiation factor IF-2 |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.329833 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCGTCT ACGAGATCGC GAAAGAGCTC GATATTCCCA ATAAGGAGCT CATTGCCAAG ATTCGGGCCC TGGGTCTCGA GGTCAACAAT CATATGTCCT CGCTCGATGC CGATGAGGTG GCCCGAGTTA AGCGCTCGCT CGAGCGTGAG CGGGTTGCCA GCACCGAGAC CAAGCGCTTG TCGTCGACGG TTTTGCGCCG TCGCAGCAAG AGCGAGCGTT CGGGAGGCCG CCGCCGCGTG GTCGCCGAAG GCGGGCAGGA CGAGGCAGCG CCCAGCGCAC CGACGCGCGA GCGCGGCAGC GGCGGCAATA ACGGTGAGGG CGTCGTGACC CGGCGTCCGG CCGCGCAGGC GCGTCCCAGC GAGCCTGCGC CGACGCCGAG CGCCCGCGCT GAGAGCAGCC CGCCGCCGGC ACAGGCGCCA CGTGCGCCCG AGCCGCGCGC GGTCGCCGAG AAGCCGGCCG AGACCCCGCC GCCCGCGGCC AAGCCGGCCG TCGAAGCGCG CCCGGCCGAG CCCGCTGCGC CGACCCCGGC CCCGGCAGCC GAGGCCGCCC CGGCCCCGGC CGCGCGCGCC GACAAGCCGG CCGAGGCGCC GCCTGTGGAG AAGGCTCCGG CGGCTGCCAA GCCCGCGGCC GAGAAGCCGG CGCCGGTCGC CGAGCCCGCG GCCGAGAAGC CGGCGGCAGC CAAGCCCGCC GAGCCGGCTG CGGCCAGCGC CGACGACAGC GCGGCCAAGG ACCGCGCGGC GGCCACGGCC AAGCCGCGCT CGCCGGTCAT CGTCAAAGGT CCGCCCGTGG TCGAGCTGGG CGGCGCCCGC ACCGGCAACG CGCCGGCTCG CGGCAATGCC AATGCACAGG GACAGGGACA GGGACAGGGA CAGGGACAGG GACAGGCACA GGCCGGCGGT CCCGCTCGCG AGAGCGCCAG CCGAGAGGCT GCGCCGCAGC CCGAGCAGCG TCCCGCCCCG GCGGCGCCGG CTCCGACCCC GGCGGCCCCG GCCCCGGCGA CGGCCTCGGC GACGGCTTCA ACCCCTGGCG AGGGCGGCGG CGGTGAGGAC GAGGATCCGT CCACCGTGAA AAACGTGGCC GAGAACGCCC GCAACCGCTT CGAGGCCGAG CTGGCGCGTG CGCGTCGCCG CGTGTCCGAG CGCGAGGAGC AGGAGCGCAA GAAGCGCGAG GCCGCGGCCG AGAAGGAGGC GCAGGCGCGC GATCCCTCGC GGCCGGCGGT GGGCACGGTC ATCAACCTGC CGACCGCGCG CATCAAGATC ACCGAGCGCA AGCCGGCGGC TCGTCCCGGC GCTACCCCGA CCCGCGATCG CTTCGGCACG CGCGGCCGTC AGGGCCGGCA GAAGCGCGAC TTCGGTCGCA AGCGCCAGGC GCCCAAGAAG CCCGGTAAGC AGACCATCAA GACCACGCCG GCCGAGCACA AGCGCGTCAT CCGCATGGAG GAGACCATCG CGCTCTCGGA CCTGGCCCGC AACATGGGCA TCAAGGCCAA CGAGGTGCTC AAGAAGCTGT GGGGCATGGG CATGCTCGGG GTCAACATCA ACACCGCGAT CGACTTCGAC ACCGCCCAGA TCCTGGCCTC GGAGTTCGGC TACGAGGTGC AGAACGTCGC GTTCCAGGAG AACACGGTGT TCACCGTCGA GCCCGACGCC GAGGACGATC TCGCGTGGCG CGCCCCGGTG GTGACGGTCA TGGGTCACGT CGATCACGGC AAGACCTCGC TGCTCGACAC CATCCGCAAG GCGCGGGTGG CCGCCGGTGA GGCCGGCGGC ATCACCCAGC ACGTGGCCGC CTACAAGGTC AGCGCGGGCG AGGACTTCGG CGACGTCGTG TTCCTCGATA CGCCCGGCCA CGAGGCGTTC ACCGCCATGC GCGCCCGCGG CGCCCAGGCC ACCGACATCG CGGTGCTGGT GGTCGCGGCC AACGACGGCG TCATGCCGCA GACGATCGAG GCCCTGAGCC ACGCCAAGGA CGCGGGCGTC AGCATCATCG TGGCGGTCAA CAAGTGCGAC CTGCCCGACG CCCAGCCCGA GCGCGTGCGC CAGCAGCTCG CCGAGCACAG TCTCATCCCC GAGGAGTGGG GCGGCGACAC CATGTACGTG GATGTCTCGG CGCACACCGG GGAGGGCATC GACAACCTGC TCGAGGGCAT CGCGGTCAGC GCCGAGGTGC TCGAGCTGCG GGCCAACCCC GAGAAGCCGG CCCGCGGCGT CATCATCGAG GCCAAGCTCG ACCGCTCGCG CGGTCCCATG GCCACGGTGC TGGTGCAGGA GGGTACGCTC AAGACCACCG ACGTGGTGGT CGCCGGGCGC TACTACGGCA AGGTCCGCGC CATCCTCGAC GACCAGGGCA ACACCATCAA AGAGGCCGGC CCGTCCACCC CCGTGGAGCT GCTCGGTCTC GACGGTGTGC CCGACGCCGG CGAGGCGCTC AACGTCGCCG ACGATGAGAA GACCGCCAAG CAGGTGGTCG AGCATCGCCG GCAGCAGCAG CGCAAGAAGG AGCTGGCCTC GACCGCCAAG ATCTCGTTCG AAAACCTCAT GGAGCGCATC CACGAGGGCG AGAACCACGA GCTCAAGGTG GTGCTCAAGG CCGACGTCCA GGGCTCTGCC GAGGCCGTCA AGCAGGCGCT GATCAAGCAG TCCACCGAGA AGGTCAAGGT CAACGTCATC CAGGCCGGCG TCGGCGGTAT CACCGAGTCC GACGTCAACC TGGCCAAGGC CGGTGGCGCC ATCATCGTCG GCTTCCACGT GCGCCCGGCC GGTAAGTCGG CCAAGCACGC CGAGCAAGAG GGCGTCGAGA TCCGCCTCTA CGACGTCATC TACGAATGTC TCGAGGACGT GCGTGCGGCC ATGGCCGGAC TGCTGGCGCC CATCAAGCGC GAGCAGGAGG TGGGCAAGAT GGAGGTCCGC GAGACCTTCC ACATTCCGCG CGTGGGCACG GTCGCCGGCT GCATGGTCAC CGAGGGCAAG GTGCTTCGGC GCTCGCTGCT CCGGGTCATC CGCGACGCGG TCCTGGTCTA CGAGGGCAAA GTGGCCAGCT TGCGCCGCTT CAAGGAAGAC ACCGCCGAGG TCCGCGAGGG CTACGAGTGC GGCCTCATGG TCCAGGGCTT CAACGACATC CAGGTCGGCG ACGTGGTCGA GTCCTACGAG ATCGTCGAGG AAGCGGCCAA GCTGTAG
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Protein sequence | MRVYEIAKEL DIPNKELIAK IRALGLEVNN HMSSLDADEV ARVKRSLERE RVASTETKRL SSTVLRRRSK SERSGGRRRV VAEGGQDEAA PSAPTRERGS GGNNGEGVVT RRPAAQARPS EPAPTPSARA ESSPPPAQAP RAPEPRAVAE KPAETPPPAA KPAVEARPAE PAAPTPAPAA EAAPAPAARA DKPAEAPPVE KAPAAAKPAA EKPAPVAEPA AEKPAAAKPA EPAAASADDS AAKDRAAATA KPRSPVIVKG PPVVELGGAR TGNAPARGNA NAQGQGQGQG QGQGQAQAGG PARESASREA APQPEQRPAP AAPAPTPAAP APATASATAS TPGEGGGGED EDPSTVKNVA ENARNRFEAE LARARRRVSE REEQERKKRE AAAEKEAQAR DPSRPAVGTV INLPTARIKI TERKPAARPG ATPTRDRFGT RGRQGRQKRD FGRKRQAPKK PGKQTIKTTP AEHKRVIRME ETIALSDLAR NMGIKANEVL KKLWGMGMLG VNINTAIDFD TAQILASEFG YEVQNVAFQE NTVFTVEPDA EDDLAWRAPV VTVMGHVDHG KTSLLDTIRK ARVAAGEAGG ITQHVAAYKV SAGEDFGDVV FLDTPGHEAF TAMRARGAQA TDIAVLVVAA NDGVMPQTIE ALSHAKDAGV SIIVAVNKCD LPDAQPERVR QQLAEHSLIP EEWGGDTMYV DVSAHTGEGI DNLLEGIAVS AEVLELRANP EKPARGVIIE AKLDRSRGPM ATVLVQEGTL KTTDVVVAGR YYGKVRAILD DQGNTIKEAG PSTPVELLGL DGVPDAGEAL NVADDEKTAK QVVEHRRQQQ RKKELASTAK ISFENLMERI HEGENHELKV VLKADVQGSA EAVKQALIKQ STEKVKVNVI QAGVGGITES DVNLAKAGGA IIVGFHVRPA GKSAKHAEQE GVEIRLYDVI YECLEDVRAA MAGLLAPIKR EQEVGKMEVR ETFHIPRVGT VAGCMVTEGK VLRRSLLRVI RDAVLVYEGK VASLRRFKED TAEVREGYEC GLMVQGFNDI QVGDVVESYE IVEEAAKL
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