Gene Hoch_3853 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_3853 
Symbol 
ID8546246 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp5302923 
End bp5306099 
Gene Length3177 bp 
Protein Length1058 aa 
Translation table11 
GC content71% 
IMG OID646388522 
Producttranslation initiation factor IF-2 
Protein accessionYP_003268245 
Protein GI262197036 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0532] Translation initiation factor 2 (IF-2; GTPase) 
TIGRFAM ID[TIGR00231] small GTP-binding protein domain
[TIGR00487] translation initiation factor IF-2 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.329833 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCGTCT ACGAGATCGC GAAAGAGCTC GATATTCCCA ATAAGGAGCT CATTGCCAAG 
ATTCGGGCCC TGGGTCTCGA GGTCAACAAT CATATGTCCT CGCTCGATGC CGATGAGGTG
GCCCGAGTTA AGCGCTCGCT CGAGCGTGAG CGGGTTGCCA GCACCGAGAC CAAGCGCTTG
TCGTCGACGG TTTTGCGCCG TCGCAGCAAG AGCGAGCGTT CGGGAGGCCG CCGCCGCGTG
GTCGCCGAAG GCGGGCAGGA CGAGGCAGCG CCCAGCGCAC CGACGCGCGA GCGCGGCAGC
GGCGGCAATA ACGGTGAGGG CGTCGTGACC CGGCGTCCGG CCGCGCAGGC GCGTCCCAGC
GAGCCTGCGC CGACGCCGAG CGCCCGCGCT GAGAGCAGCC CGCCGCCGGC ACAGGCGCCA
CGTGCGCCCG AGCCGCGCGC GGTCGCCGAG AAGCCGGCCG AGACCCCGCC GCCCGCGGCC
AAGCCGGCCG TCGAAGCGCG CCCGGCCGAG CCCGCTGCGC CGACCCCGGC CCCGGCAGCC
GAGGCCGCCC CGGCCCCGGC CGCGCGCGCC GACAAGCCGG CCGAGGCGCC GCCTGTGGAG
AAGGCTCCGG CGGCTGCCAA GCCCGCGGCC GAGAAGCCGG CGCCGGTCGC CGAGCCCGCG
GCCGAGAAGC CGGCGGCAGC CAAGCCCGCC GAGCCGGCTG CGGCCAGCGC CGACGACAGC
GCGGCCAAGG ACCGCGCGGC GGCCACGGCC AAGCCGCGCT CGCCGGTCAT CGTCAAAGGT
CCGCCCGTGG TCGAGCTGGG CGGCGCCCGC ACCGGCAACG CGCCGGCTCG CGGCAATGCC
AATGCACAGG GACAGGGACA GGGACAGGGA CAGGGACAGG GACAGGCACA GGCCGGCGGT
CCCGCTCGCG AGAGCGCCAG CCGAGAGGCT GCGCCGCAGC CCGAGCAGCG TCCCGCCCCG
GCGGCGCCGG CTCCGACCCC GGCGGCCCCG GCCCCGGCGA CGGCCTCGGC GACGGCTTCA
ACCCCTGGCG AGGGCGGCGG CGGTGAGGAC GAGGATCCGT CCACCGTGAA AAACGTGGCC
GAGAACGCCC GCAACCGCTT CGAGGCCGAG CTGGCGCGTG CGCGTCGCCG CGTGTCCGAG
CGCGAGGAGC AGGAGCGCAA GAAGCGCGAG GCCGCGGCCG AGAAGGAGGC GCAGGCGCGC
GATCCCTCGC GGCCGGCGGT GGGCACGGTC ATCAACCTGC CGACCGCGCG CATCAAGATC
ACCGAGCGCA AGCCGGCGGC TCGTCCCGGC GCTACCCCGA CCCGCGATCG CTTCGGCACG
CGCGGCCGTC AGGGCCGGCA GAAGCGCGAC TTCGGTCGCA AGCGCCAGGC GCCCAAGAAG
CCCGGTAAGC AGACCATCAA GACCACGCCG GCCGAGCACA AGCGCGTCAT CCGCATGGAG
GAGACCATCG CGCTCTCGGA CCTGGCCCGC AACATGGGCA TCAAGGCCAA CGAGGTGCTC
AAGAAGCTGT GGGGCATGGG CATGCTCGGG GTCAACATCA ACACCGCGAT CGACTTCGAC
ACCGCCCAGA TCCTGGCCTC GGAGTTCGGC TACGAGGTGC AGAACGTCGC GTTCCAGGAG
AACACGGTGT TCACCGTCGA GCCCGACGCC GAGGACGATC TCGCGTGGCG CGCCCCGGTG
GTGACGGTCA TGGGTCACGT CGATCACGGC AAGACCTCGC TGCTCGACAC CATCCGCAAG
GCGCGGGTGG CCGCCGGTGA GGCCGGCGGC ATCACCCAGC ACGTGGCCGC CTACAAGGTC
AGCGCGGGCG AGGACTTCGG CGACGTCGTG TTCCTCGATA CGCCCGGCCA CGAGGCGTTC
ACCGCCATGC GCGCCCGCGG CGCCCAGGCC ACCGACATCG CGGTGCTGGT GGTCGCGGCC
AACGACGGCG TCATGCCGCA GACGATCGAG GCCCTGAGCC ACGCCAAGGA CGCGGGCGTC
AGCATCATCG TGGCGGTCAA CAAGTGCGAC CTGCCCGACG CCCAGCCCGA GCGCGTGCGC
CAGCAGCTCG CCGAGCACAG TCTCATCCCC GAGGAGTGGG GCGGCGACAC CATGTACGTG
GATGTCTCGG CGCACACCGG GGAGGGCATC GACAACCTGC TCGAGGGCAT CGCGGTCAGC
GCCGAGGTGC TCGAGCTGCG GGCCAACCCC GAGAAGCCGG CCCGCGGCGT CATCATCGAG
GCCAAGCTCG ACCGCTCGCG CGGTCCCATG GCCACGGTGC TGGTGCAGGA GGGTACGCTC
AAGACCACCG ACGTGGTGGT CGCCGGGCGC TACTACGGCA AGGTCCGCGC CATCCTCGAC
GACCAGGGCA ACACCATCAA AGAGGCCGGC CCGTCCACCC CCGTGGAGCT GCTCGGTCTC
GACGGTGTGC CCGACGCCGG CGAGGCGCTC AACGTCGCCG ACGATGAGAA GACCGCCAAG
CAGGTGGTCG AGCATCGCCG GCAGCAGCAG CGCAAGAAGG AGCTGGCCTC GACCGCCAAG
ATCTCGTTCG AAAACCTCAT GGAGCGCATC CACGAGGGCG AGAACCACGA GCTCAAGGTG
GTGCTCAAGG CCGACGTCCA GGGCTCTGCC GAGGCCGTCA AGCAGGCGCT GATCAAGCAG
TCCACCGAGA AGGTCAAGGT CAACGTCATC CAGGCCGGCG TCGGCGGTAT CACCGAGTCC
GACGTCAACC TGGCCAAGGC CGGTGGCGCC ATCATCGTCG GCTTCCACGT GCGCCCGGCC
GGTAAGTCGG CCAAGCACGC CGAGCAAGAG GGCGTCGAGA TCCGCCTCTA CGACGTCATC
TACGAATGTC TCGAGGACGT GCGTGCGGCC ATGGCCGGAC TGCTGGCGCC CATCAAGCGC
GAGCAGGAGG TGGGCAAGAT GGAGGTCCGC GAGACCTTCC ACATTCCGCG CGTGGGCACG
GTCGCCGGCT GCATGGTCAC CGAGGGCAAG GTGCTTCGGC GCTCGCTGCT CCGGGTCATC
CGCGACGCGG TCCTGGTCTA CGAGGGCAAA GTGGCCAGCT TGCGCCGCTT CAAGGAAGAC
ACCGCCGAGG TCCGCGAGGG CTACGAGTGC GGCCTCATGG TCCAGGGCTT CAACGACATC
CAGGTCGGCG ACGTGGTCGA GTCCTACGAG ATCGTCGAGG AAGCGGCCAA GCTGTAG
 
Protein sequence
MRVYEIAKEL DIPNKELIAK IRALGLEVNN HMSSLDADEV ARVKRSLERE RVASTETKRL 
SSTVLRRRSK SERSGGRRRV VAEGGQDEAA PSAPTRERGS GGNNGEGVVT RRPAAQARPS
EPAPTPSARA ESSPPPAQAP RAPEPRAVAE KPAETPPPAA KPAVEARPAE PAAPTPAPAA
EAAPAPAARA DKPAEAPPVE KAPAAAKPAA EKPAPVAEPA AEKPAAAKPA EPAAASADDS
AAKDRAAATA KPRSPVIVKG PPVVELGGAR TGNAPARGNA NAQGQGQGQG QGQGQAQAGG
PARESASREA APQPEQRPAP AAPAPTPAAP APATASATAS TPGEGGGGED EDPSTVKNVA
ENARNRFEAE LARARRRVSE REEQERKKRE AAAEKEAQAR DPSRPAVGTV INLPTARIKI
TERKPAARPG ATPTRDRFGT RGRQGRQKRD FGRKRQAPKK PGKQTIKTTP AEHKRVIRME
ETIALSDLAR NMGIKANEVL KKLWGMGMLG VNINTAIDFD TAQILASEFG YEVQNVAFQE
NTVFTVEPDA EDDLAWRAPV VTVMGHVDHG KTSLLDTIRK ARVAAGEAGG ITQHVAAYKV
SAGEDFGDVV FLDTPGHEAF TAMRARGAQA TDIAVLVVAA NDGVMPQTIE ALSHAKDAGV
SIIVAVNKCD LPDAQPERVR QQLAEHSLIP EEWGGDTMYV DVSAHTGEGI DNLLEGIAVS
AEVLELRANP EKPARGVIIE AKLDRSRGPM ATVLVQEGTL KTTDVVVAGR YYGKVRAILD
DQGNTIKEAG PSTPVELLGL DGVPDAGEAL NVADDEKTAK QVVEHRRQQQ RKKELASTAK
ISFENLMERI HEGENHELKV VLKADVQGSA EAVKQALIKQ STEKVKVNVI QAGVGGITES
DVNLAKAGGA IIVGFHVRPA GKSAKHAEQE GVEIRLYDVI YECLEDVRAA MAGLLAPIKR
EQEVGKMEVR ETFHIPRVGT VAGCMVTEGK VLRRSLLRVI RDAVLVYEGK VASLRRFKED
TAEVREGYEC GLMVQGFNDI QVGDVVESYE IVEEAAKL