| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3823 |
|---|
| Symbol | |
|---|
| ID | 8546216 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | + |
|---|
| Start bp | 5264484 |
|---|
| End bp | 5269337 |
|---|
| Gene Length | 4854 bp |
|---|
| Protein Length | 1617 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 646388493 |
|---|
| Product | serine/threonine protein kinase with WD40 repeats |
|---|
| Protein accession | YP_003268216 |
|---|
| Protein GI | 262197007 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2319] FOG: WD40 repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0782446 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCCGATA TTCACAGAGC GAGACCGGGA CCCGCGCCAT CGTGGGACGT GACCCTCGAG
ACCATCCGTA CCGAGAACGA ACACGTCGCG CCCTCGCTCG CCCCCGGTGA CACCATCGGC
CAGTACGAGG TGATCCGCCT GCTCGGCCGC GGCGGCATGG GCCGCATCTA CCTGGCCCGC
GATCTCCGCC TGGCCCGCCT GGTCGCGGTC AAGCTGCTGG CCGCCGCCCA GGGCGACCTC
CGCAAGCGCC TGCTGGCCGA GGCCCAGGCG ACCGCGCGCT GCACCCACGA GAACATCGTG
GTAGTGCACG AGGTCGGCGA GCACGAGGGC CAGCCGTACA TGGTCCTCGA GTACCTCGAG
GGCCGCACGC TGCGCACCTG GCTGGGCGGC TACGAGCCCC CCAAGCGCTC GCGGGTCCTG
CCCGGACGCG CGGTCGAGAT CATGCTGCCC GTGGTCCGCG CCCTGGCCTA CGCGCACGAG
CGCGGCATCC TGCACCGCGA CCTCAAGCCG GCCAACATCG TCATGACCCG GGGCGGCGGG
GTCAAGGTGC TCGACTTCGG CCTGGCCGTG CTGCTGGATG CCCCGAGCGG CGAGCGCGCG
GACCCGGCCG CCAACAGCGT GCCGCTGGAG CTGAGCCGGC TGGGCGAGCG CGGCGAGGAT
GGCGACGGCG GCGAGGGCGG CGAAATCATG GGCACGCTGC CGTACATGTC GCCGGAGCAG
ATGCGCGGCG AGCCGCTCGA CGCGCGCAGC GACCTGTGGT CGGTGGGCAT CATGCTGTTC
GAGATGGTGG CCGGCCGCCA CCCGGTGCTC ACGCTCAGCG ATCCCTGGGA CGTGCGCCGC
GACGAGCGGC CCATGCCCAG CGCGGGCGAG ATGGTGCCCG GGCTGGGGCC GCTGGCCGAG
ATCATCGACC GCTGTCTCAT CAAGCAGCGC GCGCATCGCA CGCCCAGCGC GCGGGTGCTG
GGCTACGAGC TCGAGGCGCT GCTGCCGACG CGGCGGCGGC TGCTGGGGCC GGGCAGCGAC
GTGTGCCCCT TCCCCGGCCT GGCCGCGTTT CAGGAGTCCG ACGCCGATCG CTTTTTCGGC
CGCGAGGACG AGATCGCGCG CGCGGTCGCG AACCTGCGCA GCCAGCCCAT GCTCACCCTG
GTCGGGCCCT CGGGCTCGGG CAAGTCCTCG CTGGTGCGCG CCGGTATCCT GCCCGCGCTC
AAGCGCTCGG GCGAGGGCTG GGACACCTAC GTGCTGCGCC CGGGCCGCTC GCCGCTGGCC
GCGCTGGCCG CGGTGCTCAG CACCGACCCG ATCGCCGATA CCGCGCCGCT GCGCGCCCCG
CGGCAGCGCG ACAGCCAGGG CCACGAGCTG CCCAGCCGGC AGGTCGCGCG CCTGGCCGAG
GAGCCCGGCT TCCTGGGCGT GCGGCTGCGG GCGCGGGCGC ACAGCCGCAA GCGCCGCGGC
GTGGTCTTCG TCGACCAGCT CGAGGAGCTC TACACCCAGG GCGCCAGCGC GGCCGAGCGC
GCGGCCTTCC AGGCCTGCCT GCTGGGCGTG GCCGACGATC CCGACTCGCC CCTGCGCCTG
GTGCTGACCA TGCGCTCGGA TTTTCTCGAC CGGGCGACCG AAGAAGGCCA GCTCCTGAGC
GACATCACGC GCAGCCTGAT GCTGCTGTCG CCGCTGTCGC GCAGCGGCCT GCGCGAGGCG
CTGCTGCGGC CGCTGGCGGC CACCGACGTG GGCTTCGAGT CGGCGGCCCT GGTCGAGCGC
ATGGTCACCG AGCTGGCCGA CACCCGCAGC GCGCTGCCGC TCTTGCAGTT CACGGCCGCG
GCCCTGTGGG CCCACCGCGA TCCCCAGCAG CGCACGCTCA CGGCCGCCAG CTACGACGAG
CTGGGCGGCG TGGCCGGGGC GCTGGCGCGG CACGCCGACG CGGTGCTCGA GGCCATGCCC
TCGCGCGACG CCCGGCTGGC GCGCGGCGTG TTCTTGCGCC TGGTGACCCC CGAGCGCACC
CGCGCGCTGG TCACGCTGCG CGAGCTGCGC GCGCTCGGCC GCGAGCGCGA CCAGCCGCAG
GGACAGCGCC GGCGCGATAT CGACCGCGTG CTCGTGCGCC TGATCGAGGC CCGCCTGCTG
GTGGTCGCCG GCGGCGACGA GGGCGAACCG GGCACCGTCG GCCTGGTCCG CGGCGACGAG
CTGAGCGAGC GCTACGCCCA GGGCGACGGC GTGGTCGCGC GCCCGGCCGA GTACGGCGAC
AGCGGCACAG GCGGCTTCGG CAGCGTGGCC AACGTCATCG ACGGCATCGT CGAGATCGGC
CACGAGTCGC TCATCGACAC CTGGCCGCGG CTCAAGCGCT GGCTCGACGA GAACGAGGAC
GACGCCGCGA TCCTGTCGCG GCTGCGCAAC GCGGCCCGCG AGTGGGAGCG CGGCGGACGC
GCGCCCGGCC TGCTGTGGAC CGGGGCCAGC GCGAACGAGG CGCGGCAGTG GCGCGCGCGC
TACGCCGGCG CCCTGGTGCC GGCCGAGGAG CGCTACCTCG AGGCCGTGTT CGCGGCCTCG
GCGCGCTGGC GGCGGCGGCG GCGGCGGCTG GTGAGCGGCG CCCTGCTGGT GGCGCTGGTG
GCCTCGGCGG CGCTGGCCTG GTTGGCCTGG CGCGCCGACG CCCTGGCCGC CCAGGAGCGC
GAGGCCCGGC GGCAGGCGGT GGAGGCGGCG GCGCGCGCCG AGCGCGACGC GGTGCGCGCC
CACGACGCCA CGCGCATGTC GGCGGTGCGC GCGCTCGAGG GCGATCCCAC GGCCCAGCTC
GCCCTGCTGC GCGAGATCGA GGACCGGGCC GCGCCGCCGC CGGGCGCGGT GCAGGAGGCG
CGGCGCCTGC TCTACGCCAA GCTCGCCCAC GTGGTGTTCA CCGAGCACGG CGACGGCGTA
CAGTCGGCCG CCTTCAGCCC CGACGGCGAG CGCGTGGCCT CGGCCTCGTG GGACGGCACG
GTGCGCATCT GGCCCGCCGA CGGCAGCGGC GCGGCCCTGG TGCTGCGCGG CCATGAAGCC
GAGGTCTACG GCGCCGAGTT CCGCGCCGAC GGGCAGCGCC TGGTGTCGGC CTCGGGCGAC
CACACGGCGC GTATCTGGGA CACGCGGCCG GGTTCCCAGG GCCAGGTGCT GCGCGTGCTG
CGCGGCCACC GCGAGGCGGT GTGGTCGGCC GCCTTCAGCC CCGACGGCAA ACGCGTGGTC
ACGGCCTCGG GCGACCACAC CGTGCGCATC TGGCCCCTGG CCGGCGACGC CGCGCCCGCG
GTGCTCGAGG GCCACCGGGC CACGGTGCGC TCGGCCGCGT TCAGCCCCGA CGGCGGCCGC
GTGGTCTCGG CCTCGGCCGA CGGCACGGTG CGCGTCTGGG CGCTCGGCGC CGACGCCAGC
CCGGACGCGG CCGCCGGCCC GGGCAGCGCC GCGAGCCGGG CCGTGCGCGT CTTCGAGACC
GGCCCCGCGC CGGTGTGGAT GGCCCGCTTC AGCCCCGACG GCACCCGGGT CATCGCCGCG
CTGGGCGACG ACACCGCGCG CATCTGGGAC CTGGCCAGCG GCGCCGAGAT CCAGGTGCTG
CGCGGCCACA CCGACATGGT GCACGCGGCC GCCTTCAGCC CCGAGGGCGA GCGCGTGGTC
ACGGCCTCGG GCGACAACAC CGTGCGCATC TGGACGCTGG CCAGCGACGC CGCGCCGCTG
GTGCTCAGCG GCCACGGCGC CCGCATCGCG GACGCCCGCT TCAGCCCCGA CGGCGCGCGC
GTGCTCTCGG CCTCGTGGGA CAACAGCGCG CGCATCTGGA GCAGCGAGGC CAGCGACGAG
CCGCGCCGCC TCGAGGGCCA CAGCATGGCG CCGACCATGG CCAGCTTCAG CCCCGACGGC
CGCCGCGTGG CCTCGAGCGC GTGGGACCAG AGCGTGCGCG TCTGGGACCT CGCGGGCCAG
CGCCCGCCCG TGGTCCTGCG CGGCCACGAG GACGCGGTGT TCTCGGTGCA GTTCAGCGCC
GAGGGCGAGC GCCTGGTCAC GGCCGCGGGC GACAGCAGCG CGCGCATCTG GCGCCTCACC
GACGACGGCG CGGGCGGCCG CATCGAGCGG GTATTGCGCC ACCCCACCCT GGTCTCGAGC
GCCGACATCA GCCCCGACGG TCGCCGCGTG GTCACCGGCG CCACCGACCA CCTGGTGCGC
ATCTGGGATC TCGACAGCGG CGGGCCGCCG CTGGTGCTGG CCGGCCACCG CGACCGGGTC
GCCAGCGTGC GCTTCAGCCC CGACGGCGAG CGCGTGGTGT CGAGCGCGCT CGACAACACC
GCGCGGGTGT GGAGCGCCGA CGGCGGCGGC GAGCCGCTGG TGTTCACCGA GCACGACGCC
TGGGTGTGGT CGGCGAGCTT CAGCCCCGAC GGCGAGCGCG TGGTCACCGC CTCCTCGGAC
CACAGCGTGC GCATCTGGAA CGCCGACGGC AGCGGCGAGA CCCGGGTGCT CAGCGGTCAC
GACGAGGTGG TGTCGTGGGC CGAGTTCAGC CCCGACGGCG ACCGCGTCGT GTCGGCGTCG
AAGGACAAGA CCCTGCGCAT CTGGCCGCTC GACGGCAGCG AGCCGCCGGT GGTGCTCACG
GGCCACGCGC TGTGGGTCAA CACCGCGCGC TTCAGCCCCG ACGGCGGCCG CGTGGTCACG
GCCTCCGACG ACAAGCTGGT GGCGGTGTGG AGCGATCTCG ACGCCATCTC GCTCGACGAT
CCGCGGCTGT GGACCACGAC CAACTACTGC ATGCCGGTGG CACGGCGGAT GAAGATCCTG
GGCGTGACCG AGGAGCAAGC GCGCGCCAAC CGCGCCACCT GCCTGCGCCG CGTGGCCCGG
CCGCGAAAAA ATGGGCCGCA GCTACCCGTC ACCTTCCCTG TGAAGGGGGA CTAG
|
|---|
| Protein sequence | MADIHRARPG PAPSWDVTLE TIRTENEHVA PSLAPGDTIG QYEVIRLLGR GGMGRIYLAR
DLRLARLVAV KLLAAAQGDL RKRLLAEAQA TARCTHENIV VVHEVGEHEG QPYMVLEYLE
GRTLRTWLGG YEPPKRSRVL PGRAVEIMLP VVRALAYAHE RGILHRDLKP ANIVMTRGGG
VKVLDFGLAV LLDAPSGERA DPAANSVPLE LSRLGERGED GDGGEGGEIM GTLPYMSPEQ
MRGEPLDARS DLWSVGIMLF EMVAGRHPVL TLSDPWDVRR DERPMPSAGE MVPGLGPLAE
IIDRCLIKQR AHRTPSARVL GYELEALLPT RRRLLGPGSD VCPFPGLAAF QESDADRFFG
REDEIARAVA NLRSQPMLTL VGPSGSGKSS LVRAGILPAL KRSGEGWDTY VLRPGRSPLA
ALAAVLSTDP IADTAPLRAP RQRDSQGHEL PSRQVARLAE EPGFLGVRLR ARAHSRKRRG
VVFVDQLEEL YTQGASAAER AAFQACLLGV ADDPDSPLRL VLTMRSDFLD RATEEGQLLS
DITRSLMLLS PLSRSGLREA LLRPLAATDV GFESAALVER MVTELADTRS ALPLLQFTAA
ALWAHRDPQQ RTLTAASYDE LGGVAGALAR HADAVLEAMP SRDARLARGV FLRLVTPERT
RALVTLRELR ALGRERDQPQ GQRRRDIDRV LVRLIEARLL VVAGGDEGEP GTVGLVRGDE
LSERYAQGDG VVARPAEYGD SGTGGFGSVA NVIDGIVEIG HESLIDTWPR LKRWLDENED
DAAILSRLRN AAREWERGGR APGLLWTGAS ANEARQWRAR YAGALVPAEE RYLEAVFAAS
ARWRRRRRRL VSGALLVALV ASAALAWLAW RADALAAQER EARRQAVEAA ARAERDAVRA
HDATRMSAVR ALEGDPTAQL ALLREIEDRA APPPGAVQEA RRLLYAKLAH VVFTEHGDGV
QSAAFSPDGE RVASASWDGT VRIWPADGSG AALVLRGHEA EVYGAEFRAD GQRLVSASGD
HTARIWDTRP GSQGQVLRVL RGHREAVWSA AFSPDGKRVV TASGDHTVRI WPLAGDAAPA
VLEGHRATVR SAAFSPDGGR VVSASADGTV RVWALGADAS PDAAAGPGSA ASRAVRVFET
GPAPVWMARF SPDGTRVIAA LGDDTARIWD LASGAEIQVL RGHTDMVHAA AFSPEGERVV
TASGDNTVRI WTLASDAAPL VLSGHGARIA DARFSPDGAR VLSASWDNSA RIWSSEASDE
PRRLEGHSMA PTMASFSPDG RRVASSAWDQ SVRVWDLAGQ RPPVVLRGHE DAVFSVQFSA
EGERLVTAAG DSSARIWRLT DDGAGGRIER VLRHPTLVSS ADISPDGRRV VTGATDHLVR
IWDLDSGGPP LVLAGHRDRV ASVRFSPDGE RVVSSALDNT ARVWSADGGG EPLVFTEHDA
WVWSASFSPD GERVVTASSD HSVRIWNADG SGETRVLSGH DEVVSWAEFS PDGDRVVSAS
KDKTLRIWPL DGSEPPVVLT GHALWVNTAR FSPDGGRVVT ASDDKLVAVW SDLDAISLDD
PRLWTTTNYC MPVARRMKIL GVTEEQARAN RATCLRRVAR PRKNGPQLPV TFPVKGD
|
|---|
| |