| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3690 |
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| Symbol | |
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| ID | 8546080 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | + |
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| Start bp | 5076643 |
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| End bp | 5078118 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 646388358 |
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| Product | deoxyribonuclease/rho motif-related TRAM |
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| Protein accession | YP_003268084 |
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| Protein GI | 262196875 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.391491 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0380189 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTACAT CGTCTTCCTC GAATCCGCCC GGAGGCTCCG GGCGCCCCCG CGGCAAGCGC
GGCGGCAAAC GCGATAGCCG GCGCGAGCGC GCTGGCGGCG GCCGCGGCGG CGTGGGCCAG
CGCCTCGAGG TCACCGTCGA CGCGCTGGCC GCAGGCGGCG ACGGGGTCGG GCGCGACGCC
CAGGGCCGCG TCACCTTCGT GCCCTACGCG GCGCCCGGCG ACACCCTCCT GGTCGAGATC
GACGAGGTCC GCAAGGACTA CGCCCGGGCC ACGCCGATCG AGATCGTGCG CGCCTCGCCG
GCGCGCGTCG AGGCGCCGTG CGCGCACTTC AACGCCGGCC GCTGCGGCGG CTGCCAGTGG
CTGCACCTCG GCAGCAGCGC CCAGGCCAGC GCCAAGGACG AGCTGTGCGA GCGCGCGCTG
CGCCGCCAGG TCGAGGCCGG CATGGAGCTG CGCCCGGTGC GCAGCGAGGT GCCGCCGTAC
CACTGGCGCC GGCGCGCGCG CCTGCACTGG TACCGGCCGC GCAAGTCCGA GGCCGCCACC
ATCGGCTTCT TCGGCCCGCG CTCGCATCGG GTCTCGCCCA TCGACGGCTG CGTGCAGCTC
GCGCCGCCGC TGCTCGCCGC CCTGAGCGTG ATCCGCGAGC GGCTGGCGCC GACCCTGGGC
CGCACCGGCA GCATGGAATT GCTGGCCGGT CACGGCGGCG ATGTGCACCT CAGCATCCGC
GGCCGCTGCG ACCTCGACGC CGCCGCCGAT CTGGTCGGCC AGGGCCCCGT GGTCGGTGTC
CGCGTCGAAG ACCAGGCCGG GCAACCGGGC GCGCGCAGGC GGCCGCCCGC GCGCTTCGGC
AAGCCGCACA TCGAACTCGA GGCCGGCTTT TTCGGACGCG CGGACGTGTT CGCGCAGTCC
TCGGCCGACG GCAACCGGGC GCTGCTCGAC GAGGTCGAGA ACGCGCTGCG CGACGTCGCC
CAGAGCCAGA GCCAGAGCCA GAGCCAGAGC GCGGAGGAGA GCGCGGGCGG CGGCGGCCTG
GCGATCCTCG AATTGCACGC CGGCGCCGGC AACCTCACCC GCGCGCTGGC CACGCACGCC
GCCCGGCTGG TGGCCGTGGA GCGGCGCAAG CCGCCGTGGA CGCTGCCGGT CGGTCTCGAA
GCGGCCTCGG CCGACGCCGC CGCCGTGGCC GCGCGCGCGT TCGTGGCCGG CGATGTCGCC
GATGTCTGCG ACAAGCTGAG CGACGCCGAC GCGCGCTTCG ACGTGATCGT GCTCGACCCG
CCGCGCACCG GCGCGCGCGA GGTGCTGGAG CCGCTGAGCG CGCTGGCGCC CGGCTACATC
ATCTACGTGT CGTGCAACCC GGCGACGCTG GCGCGCGATC TCGACGTGCT GTCCGAGCAC
GGCTACGCGG CGCGCTGGGC GCAGCCGCTC GACCTGATGC CGCAGACCTC GCACATCGAG
GTGGTCACGC TGCTCGAGCG TCGCCCCGCG TCGTAG
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| Protein sequence | MSTSSSSNPP GGSGRPRGKR GGKRDSRRER AGGGRGGVGQ RLEVTVDALA AGGDGVGRDA
QGRVTFVPYA APGDTLLVEI DEVRKDYARA TPIEIVRASP ARVEAPCAHF NAGRCGGCQW
LHLGSSAQAS AKDELCERAL RRQVEAGMEL RPVRSEVPPY HWRRRARLHW YRPRKSEAAT
IGFFGPRSHR VSPIDGCVQL APPLLAALSV IRERLAPTLG RTGSMELLAG HGGDVHLSIR
GRCDLDAAAD LVGQGPVVGV RVEDQAGQPG ARRRPPARFG KPHIELEAGF FGRADVFAQS
SADGNRALLD EVENALRDVA QSQSQSQSQS AEESAGGGGL AILELHAGAG NLTRALATHA
ARLVAVERRK PPWTLPVGLE AASADAAAVA ARAFVAGDVA DVCDKLSDAD ARFDVIVLDP
PRTGAREVLE PLSALAPGYI IYVSCNPATL ARDLDVLSEH GYAARWAQPL DLMPQTSHIE
VVTLLERRPA S
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