| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3585 |
|---|
| Symbol | |
|---|
| ID | 8545975 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 4938561 |
|---|
| End bp | 4940855 |
|---|
| Gene Length | 2295 bp |
|---|
| Protein Length | 764 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 646388254 |
|---|
| Product | amino acid permease-associated region |
|---|
| Protein accession | YP_003267980 |
|---|
| Protein GI | 262196771 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0531] Amino acid transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.00236231 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACGGCG ACATCGGTCG AACCGTCGGC CTGCGAGGGG CGACCATGGT GGGCATCGGC
GCCATCGTCG GCGGCGGTAT TCTCGTGCTG GCGGGCGTGG CGTACGAAAA CGCGGGGCCG
GGCGCGATCT TGGCGTTCGC CGTCAACGGC GCCGTCGCCC TGATCACGGC GCTCTCGTTC
GCCGAGATCT CGAGCTCGTT CCCGGAGTCC GGCGGCACCT ACACCTTCGC CAAGAAGGTC
CTGTCGGTGC GTTCGGCCTT CGCGGTCGGC TGGGTGCTGT GGTTCGCGTA CATCGTCGCC
GGCGTGCTGT ACGCGGTCGG CTTCGCCTCC TACGCGACTT TGGCCATCGC CGAGATCTGG
CAGGCCCTGG CCGGCGACGC GCCCGCGTGG CTCGGCGACC GCCGCTTCCA GCTCCTGCTG
TCGTCGCTGG CGACCATCGC CTACGCCGCC TCGCTCGCGG CCAAGAGCGG CGGCGGCGGC
CAGTTCGCCA CCATCGGCAA GGTGGTGGTG TTCTTCGTGC TCATCGTCGT CGGCCTGGTG
GTGCTGGCGC GCCAGCCGCT GCAGCAGACC GGGTCCGCGC TCTCGCCCTT TTTGCCCGGC
GGCGCCTCGG GCCTGCTCGC GGCCATGGGC TTCACCTTCA TCGCGTTGCA GGGCTTCGAC
CTCATCGCCG CCATCGCCGG CGAGGTCAAA GACCCGGCGC GCAACATCCC GCGGGCCATG
TTCCTGTCGC TGGGCACCGC GCTGGTGGTC TATCTGCCGC TGCTGTTCAT CGTCGCCACG
GTCGGCGTGC GGCCGGGCGA GCACATCGCC GAGCTGGCCG CCGAGCAGCC CGAGACCGTC
GTGGCCGTGG CCGCGGGCCG CTTCATGGGG CCTGTCGGCT ACTGGCTGGT GGTGGTCGCC
GCGGTGCTGT CGACGCTCTC GGCGCTGCGC GCCAACCTGC TCGCGGCCTC GCGCGTGGCG
CTGTCCATGG CGCGCGACAA CACCCTGCCC GTGGTCCTGG CCCGCACCCA CGAGCAGCGC
GGCACGCCGA CCATGGCCAT CTACGCCACG ACGCTCACGC TCGTGGCCAT CGGCTTCATG
GTGCCCGACC TGGCCGGCGC CGGCGCGGCC GCGAGCCTGA TCTTCCTGGT CGCCTTCGCG
CTCACCCACG GCACCGTGTA TCTGGCCCGC ATCCGCGGCG GCGGCGCCAA GGACGCCTAC
CGCACCCCGC TGTTCCCGCT GGTCCCCGTG GTCGGCGGGC TGGCGTGTGC GGCCCTGGCC
GTGTTCCAGG CCGTAGTCGC GCCCGTGGCC GCCGCGATCG CGCTGTTCTG GGTCGGGCTG
GGCGCGTTCC TCTACGCCGC GCTGCTGGCC TCGCGCGCCG AGTCGGCGGA CGCCTCGGCG
CAGGCGCTGG ATCCGGCCCT GCTCAAGCTG CGCGGCAAGA GCCCGCTGGT GCTCCTGCCG
GTGGCCAATC CCGGTCACGC CCGCGCCCTG GTCGCGGTCG CCAACGCCCT GGTGCCCTCG
AATATCGGCC GCGTGCTGCT GCTCACCGTG CTGCCGCGCC CGCAGCAGGA CGTCGCCGCG
GTCGGGCCCG ACGGCGCCAC CGCGGCCGAC GCCGACGATA TCCTGCGCCG TCTAAAGGAT
GCGCAAGAGG TGGTCAAGAA CGCGCTGACC GCGTCGTACG CCACGGGTCA GGCGCCCGAG
GCGCTGATCA CGGCCGCGCG CGAGCCGTGG CGCGAGATCG AGCGCGTGGC CTCGGCGCAC
GCCTGCGAGT GTCTGCTGCT GGGCATGAGC CACGGGGCCA CGACCGAAGA CGTGGTTCAG
GTCGAGGGCC TCATCAATCG CGTCGACTGC GACGTCGGTA TCCTTTATGC GCCGCCCGCC
TGGCAGCTCG CCGACGCCCG CCGGGTGCTG GTGCCCATCG GCGGACGCGG CGGCCAGCAC
GAGATGCGCG CCCGGCTGCT GGGCAGCATC GTGCGCACGG CGCCGCGCGA GGTCGTGTTT
CTGCAAGTGG TCGCCGAGGG CGCCGGCGCG GACGAGATCG AGCAGGCCCG GCGCCAGGCC
GAGAGCCTGG TGCGCTGGAA TCTCACCGGA CAACACGAGG TCGCCGTGGT GGCCGCCTCC
GACGTGGCCA CCGCCGTGGT CGAGGCGGCC GCGAATTGCG ATCTGCTGGT CATGGGTCTG
CAGGCCGAGC GAAATCCCTT CGGCGTGGGC CGCGGGCGAG CCGCATTCGG CGAGCTCTCG
CTCGAGATCG CGCGCCGCGC GAGCTGCGCG ACCATCCTGC TCAGCGGCCG GCGCGGCTCC
TTCATGGGGA TCTAA
|
|---|
| Protein sequence | MNGDIGRTVG LRGATMVGIG AIVGGGILVL AGVAYENAGP GAILAFAVNG AVALITALSF
AEISSSFPES GGTYTFAKKV LSVRSAFAVG WVLWFAYIVA GVLYAVGFAS YATLAIAEIW
QALAGDAPAW LGDRRFQLLL SSLATIAYAA SLAAKSGGGG QFATIGKVVV FFVLIVVGLV
VLARQPLQQT GSALSPFLPG GASGLLAAMG FTFIALQGFD LIAAIAGEVK DPARNIPRAM
FLSLGTALVV YLPLLFIVAT VGVRPGEHIA ELAAEQPETV VAVAAGRFMG PVGYWLVVVA
AVLSTLSALR ANLLAASRVA LSMARDNTLP VVLARTHEQR GTPTMAIYAT TLTLVAIGFM
VPDLAGAGAA ASLIFLVAFA LTHGTVYLAR IRGGGAKDAY RTPLFPLVPV VGGLACAALA
VFQAVVAPVA AAIALFWVGL GAFLYAALLA SRAESADASA QALDPALLKL RGKSPLVLLP
VANPGHARAL VAVANALVPS NIGRVLLLTV LPRPQQDVAA VGPDGATAAD ADDILRRLKD
AQEVVKNALT ASYATGQAPE ALITAAREPW REIERVASAH ACECLLLGMS HGATTEDVVQ
VEGLINRVDC DVGILYAPPA WQLADARRVL VPIGGRGGQH EMRARLLGSI VRTAPREVVF
LQVVAEGAGA DEIEQARRQA ESLVRWNLTG QHEVAVVAAS DVATAVVEAA ANCDLLVMGL
QAERNPFGVG RGRAAFGELS LEIARRASCA TILLSGRRGS FMGI
|
|---|
| |