| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3405 |
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| Symbol | |
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| ID | 8545793 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | - |
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| Start bp | 4702866 |
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| End bp | 4703798 |
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| Gene Length | 933 bp |
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| Protein Length | 310 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 646388072 |
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| Product | squalene synthase HpnC |
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| Protein accession | YP_003267800 |
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| Protein GI | 262196591 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03464] squalene synthase HpnC |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.151553 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.136347 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCATC GCGTCGGCGA ACGGCTACAG CCCGTGGCCG AGATGCCCCA GCCGCCCGAA
CCGCTCGAAC TCGACGCCTG CTATCGCTAC TGCGAGGCGC TGGCGCGGGC CCGACACCAC
AACTTTCCCG TGGCCTCGCG CTTCGTGCCG CCGACCTTGC GGCGCCACAT CTGGGCGCTG
TACGCGTTCG CGCGCACGGC CGACGACGTC GCCGACGAGC CCTCCTTCGA GGGCCGCCGC
GCCAGCGAAC TCGACCGCTG GGAGGAGCGC CTCGAGCGCT GCTACTTCGG CGAGCCCGCC
GACCACCCGG TGTTCGTCGC CCTGGCCGAC ACCATCCGCC GCTTCGAGCT GCCCATCACC
GAGTTCGCGG CGCTGATCTC GGGCTTTCGC ACCGACCTCG AGGGCGGCCG CTACCACACC
TTCCGCGAGC TGCGCAGCTA CACCGCGCTG GCCGCCGAGC CCATCGGCCA CCTCTTCCTG
TACCTCGGCG GCTACCGCGA CCCGGCCCTG CACCGCTTCG CCGACGACCT GTGCACCGGG
CTCACGCTGG CCAAAGTGCT GCAGGACATC CCGGCCGACC TCGAGCGCGG CCGCATGTAT
CTGCCGCTCG AGGACCTGCG CCACTTCGGC GTGAGCGAAG ACGATCTGGC CCAGCGCAGC
GCCAGCCCGG CGGTGGGCGC GCTGGTGCGC TTTCACGTAG CGCGCGCGCG CTCCCTGTTC
GAACGCGCGC GACCGCTGGT CGACCTCATC GGCGCCAACC TGGCCATCGA GATGGCGCTC
ATCTGGCACG GCGGCATGCG CATCCTGGGC AAGCTCGAGT CCGCGGGCGT GCGCCTGCTC
GAGCGCCGCC CCGCGCTCAA CGCCGCCGAC AAAGCCTACG TGGTCGGCCG CGCCCTGGCC
TGGCGCGGTT CGTCCATCGC CCAGCGCGTG TGA
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| Protein sequence | MIHRVGERLQ PVAEMPQPPE PLELDACYRY CEALARARHH NFPVASRFVP PTLRRHIWAL
YAFARTADDV ADEPSFEGRR ASELDRWEER LERCYFGEPA DHPVFVALAD TIRRFELPIT
EFAALISGFR TDLEGGRYHT FRELRSYTAL AAEPIGHLFL YLGGYRDPAL HRFADDLCTG
LTLAKVLQDI PADLERGRMY LPLEDLRHFG VSEDDLAQRS ASPAVGALVR FHVARARSLF
ERARPLVDLI GANLAIEMAL IWHGGMRILG KLESAGVRLL ERRPALNAAD KAYVVGRALA
WRGSSIAQRV
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