| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3177 |
|---|
| Symbol | |
|---|
| ID | 8545565 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | + |
|---|
| Start bp | 4376325 |
|---|
| End bp | 4378436 |
|---|
| Gene Length | 2112 bp |
|---|
| Protein Length | 703 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 646387844 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003267572 |
|---|
| Protein GI | 262196363 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02226] N-terminal double-transmembrane domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.622829 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGAGTTCC TAGCGCCGCT GATGCTGCTC GGCGCGCTGG GCGTGGCGGT GCCGGTGATC
ATCCACCTCA CCGGGCGCCA GCGCGCCAAG CCGGTGCGCT TCGCGGCCTT TGATTTCCTG
ATGGGCGAGC GCCGCGAGAC CGCGCGCCGC CACCGCGTGC GCCAGCTCGC CCTGCTGATC
GTGCGCGCGC TCATCTGCCT GAGCATTCCC CTGGTGCTGG CCAAGCCCTT CGCCACCTGC
ACGGCGCGCG GGCCCGAGGT GACGCGCGGG CCCCAGGCGG CCGTGATCGT CATCGACGAC
TCGTTCGCGA CCGGCTTCGA GATCGCCGGC GAGACCCTGT CCGAGCGCGC CCGCGCCCAC
GCGCGAGCCA TCCTCGAGGA GCTGGGCCCC GAGGCCGACG TCGCCATCCT GCGCGCGGCC
GAGGACGCGC CCGCGGCCTC GGAGCTGTCG CGCGACCACA TCCGGCTGCG CAGCGCTATC
GCCGCGATCC GGCCGAGCGC GCGGCCGCCG GACACCGGGA CGGCGCTGCG CCGCGCCGGC
CAGCTCTTGG CCGCGAGCAA CCACGAGCGC CGTACGGTGT ATCTGGTGTC GCTGCTGGCC
GAGAGCGGCT TTCAGGGCGG TAGCGCGCCG CCCTGGCCAC CGGCCACGGG CCCGGCTCTG
GTCACGGTGC CGCTGCTCGA CGCCGAGGCC GGCGAGCTGG GCGATAACCT CGCCATCACC
GATGTGAGCG TCGAGCGCGA CCCGGCCTCG GGTTCGCGCG GCGTGCGCGT GCTGGTCGAG
ATCGAGAACT TCGGCGGCGC GCCTGTGCAG GGGCGCAGCA TCTCGCTGCG CATCGAGGAC
CAAGAGGTAG CCCGCGGCGA GTTCGCCGTC GGTCCGCGGC AGCGCACGGT GAAACAGTTT
TTGGCGGCGC TACCCACGGG CTCGCGCTTC GCCGACGTGA CCGTGGAGCT GGCGCCCGAT
GCCCTGGCGG CCGACGACCG CCGCTACGCG CGCGTCGAGC TGCGCGAGGA GGTGCGGGTG
CTGCTGGTCA ACGGCGATCC CCACACCGTG CGCTACGAGG ACGAGCTGTT TTATCTCGAC
GCCGCGCTGC GCCCGGGCGA CCGCGCCGAC AGCGGCGCCG CGCTGACCTC GGTGACGGTC
GACGACCTGT CCGAAATCGA CTTCGCCGAC TACGACGTGA TGATCCTGGC CAACGTGCGC
GCGCTGCGCC GCGAGATCGT GGCCGCGATC AGCGCCTGGG TGGTCGGCGG CGGCGGGTTG
CTCGTGGGCG TCGGCGACAA CGTCGAGGCC GGCGCCTACG CGCGGACCAT GGAGCCGCTG
CTGCCGCAGA AGCTGCGCAC GCCGCTCGAC GCCAGCTACG GCAGCCGCGG CGCCGAGCGC
GACGAGCGCG CCCTGCGGCT GACCAAGTGG GAGGCCGAGC ACACCATCTT CGCGGTGTTC
TCGGGCGACG CCCCGGGGCT GCGCGAGGCC CGCTTCGACC GCGTGTTTTT GCTCGGGCCG
ACGACCCAGG TCGAGGAGCG CCGGGTGCTC GCGCGTTACA CCAACGGCGC GGCGGCGCTG
GTCGAGGGCC GCATCGGCGA CGGCCGGGTC ATCCTGTTCA CCTCGAGCCT GGACCGCGAC
TGGAACGATC TGGTCATCCA CCCCGGGTTT TTGCCGCTGA TGCAGCGCTC GGTGCGCTAC
CTGGCGCGCA AGCAGGACGC CAATCGCCAC GCCGGCGTGC TGGTCGGCCG CACCGCGGTG
GTGCCGATCA CGGCCGCCGA TACCCGCGTC GAGATCCGCG GTCCCGCGGC CACGCGCGTC
ATCCTCGAGG GCGAGCGGCT CGCCGATCGC ACCGCCGTGC GCGTCAACGA GACCGGCTAC
GCGGGCTTCT ATGAGGTATG GGCGCGCGAC GCCAGCGACG GCATCCGCCA TCGCCCCGAG
AGCGACTTCG CGGTCAACGT CGACACCCGC GGCTCCGACC TCGGCATGGT GCCGGCCGAG
CGCCTGCCCA CGGGTGGCCA GGCCGAGCTG CGCGCGCCGG CCGAGCACGA GCGCCGGGTC
GAGCTGTGGC ACGCGATCGC GGCCGGTCTG CTGCTGCTGC TGATCGCCGA ATCGCTGCTG
GTTCTGCGCT GA
|
|---|
| Protein sequence | MEFLAPLMLL GALGVAVPVI IHLTGRQRAK PVRFAAFDFL MGERRETARR HRVRQLALLI
VRALICLSIP LVLAKPFATC TARGPEVTRG PQAAVIVIDD SFATGFEIAG ETLSERARAH
ARAILEELGP EADVAILRAA EDAPAASELS RDHIRLRSAI AAIRPSARPP DTGTALRRAG
QLLAASNHER RTVYLVSLLA ESGFQGGSAP PWPPATGPAL VTVPLLDAEA GELGDNLAIT
DVSVERDPAS GSRGVRVLVE IENFGGAPVQ GRSISLRIED QEVARGEFAV GPRQRTVKQF
LAALPTGSRF ADVTVELAPD ALAADDRRYA RVELREEVRV LLVNGDPHTV RYEDELFYLD
AALRPGDRAD SGAALTSVTV DDLSEIDFAD YDVMILANVR ALRREIVAAI SAWVVGGGGL
LVGVGDNVEA GAYARTMEPL LPQKLRTPLD ASYGSRGAER DERALRLTKW EAEHTIFAVF
SGDAPGLREA RFDRVFLLGP TTQVEERRVL ARYTNGAAAL VEGRIGDGRV ILFTSSLDRD
WNDLVIHPGF LPLMQRSVRY LARKQDANRH AGVLVGRTAV VPITAADTRV EIRGPAATRV
ILEGERLADR TAVRVNETGY AGFYEVWARD ASDGIRHRPE SDFAVNVDTR GSDLGMVPAE
RLPTGGQAEL RAPAEHERRV ELWHAIAAGL LLLLIAESLL VLR
|
|---|
| |