| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3070 |
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| Symbol | |
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| ID | 8545458 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | + |
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| Start bp | 4234080 |
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| End bp | 4235027 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 646387741 |
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| Product | low-density lipoprotein receptor YWTD repeat protein |
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| Protein accession | YP_003267469 |
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| Protein GI | 262196260 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.722808 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.473204 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAAAC GGTATCTAGC GAGCGTGGTT GTTGCGTTGC TGTGCGCCGC GTGTGGCGAC
AATTTCGACA CCCCGTCCGA TCCGGACGCA GCCCCGACCC CGGACGCAGC CCCGACCCCG
CCCGACGCCG CGCCGCCCGA CGCTGTGCCC GACGCTGCGC CCGACGCTGC GCCGCCCGAC
GCCAACACCG CGGTCTCCTA CATCTACTGG GCCGACACCA GCGGCGTCAT CGGCCGCACA
GATGTGGCCA CCGGCATCTC GGAGGAGCTG CTCACCGACG TAGGGCAGGC CTTTTCGGTG
GCCGTGGACC CGGCCAGCGA CACCTTGTTC TACGCAGCCG GCACCGACAT CGGGCGCGCC
GGGCTCGATG GTTCTGGCCC GAGCACGATC GTCACCGGGG CCGCGAGTCC GTTTGGGCTG
GCCATCGACA CCGCCAGCGA CAAGCTGTAC TGGGTCGAGT TTAGCTCGAA CAGCTTGCGC
CGCGCGGATC TCGATGGGGG CAACGCCGAG ATCGTGGCGT CGACGACTAT CAACGACCCC
GCCGGCCTCG CGCTCGATCT CGCCAACGGC GACGCCTACA CCCTTGGCTA CAACAACCCG
GCGCTGTGGC GCATCGATCT CGACGACGGC AGCGTGACCG TCGTCGATGG CGCGCTGCCG
GGTTCCCAGG GCGTGGATCT GGTCCTCGAG TCCGGTGCGC AGACCTTGTA CTACACGCGC
CGCGACGCCG AGGTACGCGC CATTGGCACG GACGGCTCCA ACCGGGCCAG CCTGGTCACG
GGCCAGAGCT CAGTGCAGGG CATCGCCGCG GACTTCGTCG CGAGCAAGCT GTACTGGATA
TCGGCCGGCG TCATCCGCCG CGCCGACCTC GACGGCAGCA ACGTCGAGGA CATCGCCGAT
ACCGGGCGCA GTATCTGGGA CATCGCCTTC GCCACCGTGA ACGAGTAG
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| Protein sequence | MMKRYLASVV VALLCAACGD NFDTPSDPDA APTPDAAPTP PDAAPPDAVP DAAPDAAPPD
ANTAVSYIYW ADTSGVIGRT DVATGISEEL LTDVGQAFSV AVDPASDTLF YAAGTDIGRA
GLDGSGPSTI VTGAASPFGL AIDTASDKLY WVEFSSNSLR RADLDGGNAE IVASTTINDP
AGLALDLANG DAYTLGYNNP ALWRIDLDDG SVTVVDGALP GSQGVDLVLE SGAQTLYYTR
RDAEVRAIGT DGSNRASLVT GQSSVQGIAA DFVASKLYWI SAGVIRRADL DGSNVEDIAD
TGRSIWDIAF ATVNE
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