| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_2478 |
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| Symbol | |
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| ID | 8544865 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | + |
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| Start bp | 3412914 |
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| End bp | 3414752 |
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| Gene Length | 1839 bp |
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| Protein Length | 612 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 646387178 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_003266907 |
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| Protein GI | 262195698 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0194919 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.119382 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTCCG CGATTTCAAA TTTCAACGTC CTGCTGCTCA CGGGGCTGCT GGGTGGCATG
AGCGGCTGTA TGGCCGCCGA CCTCGACACC GGGACGCCGG ACACGGCGTA CGAAGAAGAG
CCGGCTTCGC CCGCGGGCGA AACGCCCGTG GGCGAAAAAG ACAAAGCCCA GACCGCCGGT
CACGGCGATT TCGCCGGTAC CGCCTTCGTG CACCTGTTCG AGTGGCGCTG GAACGACGTC
GCGCGCGAAT GCGAGGAGTG GCTCGGCCCC AAGGGCTTCG AGGCCGTGCA GGTGTCGCCG
CCCAACGAGC ACATCTCCCA CGACACCTGG TGGGCGCGCT ATCAGCCGGT GAGCTATCGC
CTGGAGAGCC GGGGCGGCAC GCGCCAAGAG TTCATCAACA TGGTCAACCG CTGCGACGCG
GCCGGAGTCG CCGTGTATGT CGACGCGGTG GTCAACCACA CGGCCGCGTT CAACGGCGGC
GGCGTGGGCA GCGGCGGCTC GAACTGGAGC GTGCGCCAGC ATCCCATGTA CAGCGCACAG
GATTACCATT CGCCGTGCGC GATCAATAAT TACGGCAATC GCTACGAGGT ACAGAACTGC
GGTCTGTCGG GCTTGCCCGA CCTCAACACC GGCTCGTCCT ACGTGCAGGA GACCATCGCC
GGCTATCTCA GTGATCTGCG CAACATCGGC GTCGCCGGCT TCCGCATCGA CGCCAGCAAG
CACATGTACC ACGGCGACAT CGCCGGTTTC CTCGGCCGCG CGGGCAACCC CTACACCTTC
CTCGAGGTCA TCGGCTCGGC TGGCGAGGCG GTTCAGCCCG GCGAGTACAC CTATCTCGGC
CAGGTGACCG AATTCGCCTA TAGCTCGCAC ATCGGCCATC GCTTCAAGCA GGGCCAGATC
GCCGACCTCG ACCAGATCTC CAACGGCAAG ATTGCCAGCA GCGACGCCGT GATCTTCGTG
GACAACCACG ACAACCAGCG CGGTCACGGC GCCGGCGGCG TAGTGGTCAG CTTCCACGAC
GGCGCGCTCT ACAACCTGGC CAACACGTTC ATGCTGGCGT TTCCGTACGG CTATCCGAAG
GTGATGTCGA GCTACGAGTT CTCCAACAGC GACCACGGCC CGCCGGGGCC GGGTGGCTGC
AGCACCAGCG GCTGGGTGTG CGAGCATCGC TGGACCACCA TCGCCAACAT GGTCGGCTTC
CGCAACGTGA CCAATGGCGC CCCGCTCAGC AACTGGTGGG ACAACGGCAA CAACCGCATC
GCCTTCGGCC GCGGCGACAA GGGCTTCGTC GTCATCAACA AGGAAAGTGG CGCGATGAAT
CAGACCCTGC AGACCGGCAT GGCGGCCGGC GTGTACTGCA ACATCGCCGC GGGCGATTTC
GATAACGGCG CCTGCACCGG CCCGACGATC ACGGTCGACG GCAGCGGTCA CGCGAACTTC
TCGGTCGGCG CCTTCGAGGC CGCGGCCATC CACGTCGGCG CCCAGGTGTC CGGCGATGGC
GGCGGCGACG GCGGCGGTGA CGGTGGTGGC GGTGACGGCA GCGTGAGCGT GAGCTTCTCC
TGCCAGCAGG GCCACACCTC CTTCGGCCAG AGCGTGTACG TCATCGGCAG CATCCCCGAG
CTGGGCTCGT GGAATCCGGC CAATGCGGTG CTGATGTCAC CCGACGCCTA CCCGACCTGG
AACAAGACCA TGTCGCTGCC CGCCAACCAG GCGGTAGCCT GGAAGTGTCT CAAGCGCGAC
GAGGTCGATC CCAACGCCCG CGTCGAGTGG GAGCCCGGCG CCGACACCAG CTTCACCACG
CCGAGCTCGG GCACGGCGAC CACGGTCGGC AGCTTCTGA
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| Protein sequence | MKSAISNFNV LLLTGLLGGM SGCMAADLDT GTPDTAYEEE PASPAGETPV GEKDKAQTAG
HGDFAGTAFV HLFEWRWNDV ARECEEWLGP KGFEAVQVSP PNEHISHDTW WARYQPVSYR
LESRGGTRQE FINMVNRCDA AGVAVYVDAV VNHTAAFNGG GVGSGGSNWS VRQHPMYSAQ
DYHSPCAINN YGNRYEVQNC GLSGLPDLNT GSSYVQETIA GYLSDLRNIG VAGFRIDASK
HMYHGDIAGF LGRAGNPYTF LEVIGSAGEA VQPGEYTYLG QVTEFAYSSH IGHRFKQGQI
ADLDQISNGK IASSDAVIFV DNHDNQRGHG AGGVVVSFHD GALYNLANTF MLAFPYGYPK
VMSSYEFSNS DHGPPGPGGC STSGWVCEHR WTTIANMVGF RNVTNGAPLS NWWDNGNNRI
AFGRGDKGFV VINKESGAMN QTLQTGMAAG VYCNIAAGDF DNGACTGPTI TVDGSGHANF
SVGAFEAAAI HVGAQVSGDG GGDGGGDGGG GDGSVSVSFS CQQGHTSFGQ SVYVIGSIPE
LGSWNPANAV LMSPDAYPTW NKTMSLPANQ AVAWKCLKRD EVDPNARVEW EPGADTSFTT
PSSGTATTVG SF
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