| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_2259 |
|---|
| Symbol | |
|---|
| ID | 8544645 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 3142127 |
|---|
| End bp | 3142654 |
|---|
| Gene Length | 528 bp |
|---|
| Protein Length | 175 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 646386964 |
|---|
| Product | 20S proteasome A and B subunits |
|---|
| Protein accession | YP_003266695 |
|---|
| Protein GI | 262195486 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG5405] ATP-dependent protease HslVU (ClpYQ), peptidase subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0460618 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGCGCGA CCACCATCCT CTCGGTGCGC CGCGGCAACC ACGTCGTCAT CGCCGGTGAC
GGCCAGGTCT CGCTCGGCCA GACCATCATG AAGGCCTCGG CGCGCAAAGT CCGGCGCATG
AACGAGGGCG CGGCCGTGGC CGGCTTCGCG GGCTCGGCCG CCGACGGCAT CGCCCTGTTC
GAGCGCCTCG ACGGCAAGCT GCGCGGCCAC GGCGGCAACC TGCGCCGCGC CGTGGTCGAG
ATGGCCAAGG ACTGGCGCAC CGATCGCGTG CTGCGCCGCC TCGAGGCCAT GCTGATCATC
GCCGATCGCG AGCAGACCTA TCTGGTCTCC GGCACCGGCG ACGTCATCGA ACCCGACGAC
GGCGTGGTAT CGATCGGCTC GGGCGGCCCC TACGCCCTGG CCGCCGCGCG CGCGCTGATC
GCCAAGACCG AGCTGGGCGT GCGCGACATC GCCGAGACCG CCATGGGCAT CGCGGCCGAC
ATCTGCGTGT ACACCAACCA CAAGCTGGTC ATCGAGGAGC TGACATGA
|
|---|
| Protein sequence | MRATTILSVR RGNHVVIAGD GQVSLGQTIM KASARKVRRM NEGAAVAGFA GSAADGIALF
ERLDGKLRGH GGNLRRAVVE MAKDWRTDRV LRRLEAMLII ADREQTYLVS GTGDVIEPDD
GVVSIGSGGP YALAAARALI AKTELGVRDI AETAMGIAAD ICVYTNHKLV IEELT
|
|---|
| |