Gene Hoch_2020 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_2020 
Symbol 
ID8544402 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp2789782 
End bp2790765 
Gene Length984 bp 
Protein Length327 aa 
Translation table11 
GC content70% 
IMG OID646386723 
ProductIsochorismatase 
Protein accessionYP_003266458 
Protein GI262195249 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1535] Isochorismate hydrolase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.745871 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTATCC CCCGCATTAC GCCGTATCCG CTGCCCCAGC CGAGCGCGCT GCCCGAGAAC 
CGGGTGTCGT GGTCGCTCGC GCCGGCGCGC GCGGTCCTGC TCATCCACGA CATGCAGGAA
TATTTCCTCG ACTACTACGA CGCCTCGGCT TCGCCCGCGC GCGAGATGGT CGCCCACATC
GACCAGTTGC GCACGCGCTG CGCGGCGCTC GGCATCCCGG TCGTGTATTC AGTACAGCCG
GCCGAGCAGA CGCCGGAAGA GCGCGGACTG CTCACGGACA TGTGGGGGCC GGGTCTGGTC
GCGAAGCCGC ACAAGCAGGC GGTGGTGAGC GCGCTGGCCC CGCGCGCCGG TGACGTCACG
CTGACCAAGT GGCGCTACAG CGCGTTTCAG CGCACCGATC TGCGCGAGCT GCTGCGCCGC
TGGGGGCGCG ACCAGCTCAT CATCTGCGGC GTGTACGCGC ACATCGGCTG CCTGATGACC
GCGGGCGAGG CGTTCATGAG CGACGTGCAG CCGTTCTTGG TCAGCGACGC CACGGCTGAT
TTCGATCGCG AAAAACACCT CATGGCCATC GAGTGGGTGG CCCAGCGCTG CGGCGTGGCG
CTGTCTACCG GCGATGCTCT GGCCGCGCTC GCCGAGCAAG CGCCGACGCA GACGGCTACG
CCGGTGGAAA CCGGACAAGC GTCCGCTTCC GGGATCAGCC TCGAGCGCCT GCGCAGCGAC
ATCGCCGAGA TTCTCGAAGA ACCGGCCGAG GACATCGCCG ATGACGACAA CCTGCTCGAT
CTCGGCCTCG ACTCGATCCG GCTGATGTCG CTGGTCGAGC GCTGGCGCGC GCAGGGCGCC
GAGCTGTCGT TTGTCGAGCT GGCCGAGCGG CCGTCGATTG CGGACTGGTG GACGATCCTC
TCGGCGCCGA TGCCGCTGGC GGCCGACGCC GTGGCCAGCG CGCGCGCCGA GGCCGGCACG
GCACCGCAGG CGGAGGAGCG TTGA
 
Protein sequence
MGIPRITPYP LPQPSALPEN RVSWSLAPAR AVLLIHDMQE YFLDYYDASA SPAREMVAHI 
DQLRTRCAAL GIPVVYSVQP AEQTPEERGL LTDMWGPGLV AKPHKQAVVS ALAPRAGDVT
LTKWRYSAFQ RTDLRELLRR WGRDQLIICG VYAHIGCLMT AGEAFMSDVQ PFLVSDATAD
FDREKHLMAI EWVAQRCGVA LSTGDALAAL AEQAPTQTAT PVETGQASAS GISLERLRSD
IAEILEEPAE DIADDDNLLD LGLDSIRLMS LVERWRAQGA ELSFVELAER PSIADWWTIL
SAPMPLAADA VASARAEAGT APQAEER