| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_1874 |
|---|
| Symbol | |
|---|
| ID | 8544256 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | + |
|---|
| Start bp | 2582055 |
|---|
| End bp | 2582759 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 646386580 |
|---|
| Product | two component transcriptional regulator, winged helix family |
|---|
| Protein accession | YP_003266315 |
|---|
| Protein GI | 262195106 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.254038 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.519638 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATACGA GTGACCCTGC GCGTATTTTG GTGGTCGAAG ACGACGCCCC GACCGCGAGC
GCGATCGTGC GCGCGCTCAA AGGCGCCGGC TTCGAGGTCG AACTCGCGGT CGACGGCATC
CTGGGCCTGG AGGCGATTCG GCGCGCCCGC TTCGATCTGG TCGTCCTCGA TCTGCGGCTG
CCGCGCGCCC ACGGTCTGGC GCTGCTCGAG GCGCTGCGCG GCGCCGAGGG ACGCGCGCGG
CACAATCGCG ATAGCTGCGT GCTGGTCATC AGCGCCTCCA CCGAGCTGGC GTCGCGGCTG
CGCTCCTTCG AACTCGGCGC CGACGATTTC GTGCCCAAAC CGTTCTGGAC CGAGGAGCTG
CTGGCGCGCA TCCGGCGGCG CCTGGGGCGG CCGGACGCGG TCGCGCGCAA CAGCGAGATA
GGGATCCTCA CGGTCGATCC GCGCGCGCGG CAAGTGCGCG TGGCCGGGCG CGAGGTGGCG
CTCACCGGGG CCGAGTTCGA TCTGCTGTGT GTGCTCGTGC GCGCGCGCGG CGGCGCGGTG
TCGCGCGCGC AACTGGCCGA GGAGGTGCTG GCCGCCGATG CCGACGGGCG CGGGCGCACG
GTCGACTCAC ACGTGGCCCG GCTGCGGCGC AAGCTCGGCG ACGCTGGCGG CTACGTGCGC
ACGGTCTGGG GGATTGGCTA CCGGCTGTCC GAGGAAAACC AATGA
|
|---|
| Protein sequence | MDTSDPARIL VVEDDAPTAS AIVRALKGAG FEVELAVDGI LGLEAIRRAR FDLVVLDLRL
PRAHGLALLE ALRGAEGRAR HNRDSCVLVI SASTELASRL RSFELGADDF VPKPFWTEEL
LARIRRRLGR PDAVARNSEI GILTVDPRAR QVRVAGREVA LTGAEFDLLC VLVRARGGAV
SRAQLAEEVL AADADGRGRT VDSHVARLRR KLGDAGGYVR TVWGIGYRLS EENQ
|
|---|
| |