| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_1730 |
|---|
| Symbol | |
|---|
| ID | 8544112 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 2352934 |
|---|
| End bp | 2355276 |
|---|
| Gene Length | 2343 bp |
|---|
| Protein Length | 780 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 646386437 |
|---|
| Product | cysteine-rich repeat protein |
|---|
| Protein accession | YP_003266172 |
|---|
| Protein GI | 262194963 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02232] Myxococcus cysteine-rich repeat
[TIGR03382] Myxococcales GC_trans_RRR domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.120175 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCACG ACACTCGCTC CTCTCGCTGG CGCTCGCAGC TCGCCGGCGT CTGCGCCGCG
GCCGCCCTGC TGTGCACCGC GGCCTCGGCC CACGCCGCCA TCTACCTGTC CAACCCCCGC
ACCATCGGCT CCGGCGGCAA CGACGCCGAC TGGCGCGCGC CCACCGCCCT GTTCAGCATC
GACGAGAGCA CCGGCCTGAC CACGACCCTG CCCGACGTCA CGCTCGGCGG CCAGGACGTC
ATCGTCACCG CGCTGGCGCT CACGGCCGGC GGTGAGCTGT ACGGCTTCCT GTACGACAAC
GACCTGGGCT CGCGCCTGGC CACCATCGAC ACCGCCACCA GCGAGGCCAC CCTGGTCGGC
GCCGGCAGCT TCTTCGCCGG TGAGATCAAC GGCGCCGCCT TCGACCGCAA CGGCCGCCTG
TGGGTGGTCG ATTTCGCCGA CCCGGCCAAC CCCAGCTTCG ACGAGTTCGA CATCGCCAGC
CTGAGCCTGG CCGGCAACGG CTTCCTCTTG CCCGAGTCGG CGAACCTGCT CGGCGGCGAC
ATCACCTTCG ACCTCGACGG CCAGTGCTAT TTTATCGGCA CCCTGTCCGG GAACAGCCAG
ACCAAGCTGT ACACCTGCGA CGTGGTCGGC CGCAGCTTCA CCGAGCTGAG CGACGTCGTC
ACCCAGGGCT TCGTCGACAA CCCGACCAAC GTGTTCTCGC CCTCGGGCAT GGCGTTCTCG
CTCGACCCCG TGACCTGCGA GCCGGTGCTC ATGGCCATCG ACGGCAACAA CATCGACGAG
GTCGGCCGCT TCGACCTCAC GCAGTCGCCC GTGGTCATCA ACCAGACCGA ATCGCTGAGC
AACATCTCGT ACTTCTTCCA CCCCGACCTG GCCGGCTTCC CGTCCATCGC CCAGGTGCCG
AGCTGCGACT CCTGCGGCGA CGGCACGGTC GACGAGGGCG AGGAGTGCGA CGACGGCAAC
ACCGACGACG GCGACGGCTG CTCGTCCGTG TGCCTCGACG AGCCCATGCC CACCTGCGGC
GACGGCAGCA TCGACGCCGG CGAGGTCTGC GACGACGGCA ACACCACCGA CGGCGACGGC
TGCTCGAGTA GCTGCGCGGT CGAGGTCGAT TGGGTGTGCC AGCGCGCCGA GTTCGGCCTG
GTCGGCTTCG AGACCCTGGC GGCCGACGAG GGCGACCCGC CGGAGTGGAA CGAAGAGGAC
CGCTTCACCG TGTTCCAGGC GGTCAACGCC GACCCCAGCG CGTACATCTC GACCCTGCCG
GCGCAGAACG TCGGCGAGAT CCGCATGTCC ATCGAGGTCG AGGACACCTC GGACGACGAC
TTCATCGGCT TCGTGCTCGG CTTCGACCAG GGCGAGTTCA CGGCCGAGGA CGCCGCGTAC
ATCCTCATCG ACTGGAAGCA GGAGACCCAG GATCGCGACC AGTACGGCGT CGGTCTGCGC
GGCATGGCGG CCAGCCTCAT CAACGGCGCG GTCACGCCCG GCGACCTGCA GACCCACACC
GGCGCCGCCG CCGAGCTGGC CCGCGCCGCC ACCTTGGGCG ACACCGGCTG GGTGGACGAG
ACCGAGTACG AGTTCGCGCT CGACTACACC GACACCCGCC TCACCCTGTA CGTGGACGGC
GTCCTCGAGT TCGACCTCAC GGCCGCCGAT TTCGGCCTCA CCAGCTTCCC CAGCGGCAAC
GTCGGCTTCT ACAACTTCTC GCAGGAGAAG GTCCGCTACC GGCTGCTCTC GCCCCGCGAC
CAGAGCGTGT GCACCTTCGA CCCGGGCATC TGCGAGGGCT ACGACGACGC GCTCGACGCC
GACGGCGACG GCATCCCCGA CGGCTGCGAC CTGTGCGCGG GCGCCGACGA CACCCAGGAC
GCCGACGGCG ACGGCATCCC CGACGCCTGC GACCTGTGCG AAGGCGCCGA CGACAGCAAA
GACGCCGACG GCGACGGCGT CCCCGACGGC TGCGACCTGT GCGTGAGCGG CGACGACAGC
CTCGACGCCG ACGGCGACGG CACCCCGGAT AGCTGCGACC TGTGCGCCAA TGCCGACGAC
AGCAAAGACG CCGACGGCGA CGGCACCCCG GACGCCTGCG ACCTGTGCGC CGCCGACCCC
GAGAACGACG CCGACGGCGA CGGCGTGTGC GAGATCGACG ACCTGTGCCC CCTGGTCGCC
GACCCCGACC AGCGCGACAT CGACGGCGAC GGCATCGGCG ACGCCTGCGA CGACGAGGTC
CGCTACGGCC TCCAGGGCGG CGGCTGCTCG GCCAGCGCCG ATCCCGCGGC CGGCACCTGG
CTGCTGCTGC TGCTCGGCGC CCTGCTGAGC CTGCGCCGCC GCCGCCGCCA GCTCAGCGCC
TGA
|
|---|
| Protein sequence | MNHDTRSSRW RSQLAGVCAA AALLCTAASA HAAIYLSNPR TIGSGGNDAD WRAPTALFSI
DESTGLTTTL PDVTLGGQDV IVTALALTAG GELYGFLYDN DLGSRLATID TATSEATLVG
AGSFFAGEIN GAAFDRNGRL WVVDFADPAN PSFDEFDIAS LSLAGNGFLL PESANLLGGD
ITFDLDGQCY FIGTLSGNSQ TKLYTCDVVG RSFTELSDVV TQGFVDNPTN VFSPSGMAFS
LDPVTCEPVL MAIDGNNIDE VGRFDLTQSP VVINQTESLS NISYFFHPDL AGFPSIAQVP
SCDSCGDGTV DEGEECDDGN TDDGDGCSSV CLDEPMPTCG DGSIDAGEVC DDGNTTDGDG
CSSSCAVEVD WVCQRAEFGL VGFETLAADE GDPPEWNEED RFTVFQAVNA DPSAYISTLP
AQNVGEIRMS IEVEDTSDDD FIGFVLGFDQ GEFTAEDAAY ILIDWKQETQ DRDQYGVGLR
GMAASLINGA VTPGDLQTHT GAAAELARAA TLGDTGWVDE TEYEFALDYT DTRLTLYVDG
VLEFDLTAAD FGLTSFPSGN VGFYNFSQEK VRYRLLSPRD QSVCTFDPGI CEGYDDALDA
DGDGIPDGCD LCAGADDTQD ADGDGIPDAC DLCEGADDSK DADGDGVPDG CDLCVSGDDS
LDADGDGTPD SCDLCANADD SKDADGDGTP DACDLCAADP ENDADGDGVC EIDDLCPLVA
DPDQRDIDGD GIGDACDDEV RYGLQGGGCS ASADPAAGTW LLLLLGALLS LRRRRRQLSA
|
|---|
| |