| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_1684 |
|---|
| Symbol | |
|---|
| ID | 8544066 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | + |
|---|
| Start bp | 2293284 |
|---|
| End bp | 2294375 |
|---|
| Gene Length | 1092 bp |
|---|
| Protein Length | 363 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 646386392 |
|---|
| Product | cell surface receptor IPT/TIG domain protein |
|---|
| Protein accession | YP_003266127 |
|---|
| Protein GI | 262194918 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00411006 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00000638895 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACTC TTACCAGTAT TGTCACGGCA GCGTTCCTCC TCGGTACCAC GGCTTCGGCC
ATGGCCGAGA CCCGGCCCAA CACCTACGTG CCCAGCCAGC GCGCGCTGCA AATCCACAAC
TTCCAACCCC AGTCGGGCGG CGTTGGCTCC TACGTCACCG TCAACGGCAG CGGCCTTAAT
CGCGTCGAGT ACGTGCTCGT TGGCGGCTAC AAAGTCACCC CCGTGCAGCA CAGCAACGAC
CAGATCTCGT TCCGCATCCC CAGCCGGCAC GGCAACGGTG AGATTCGCCT GCACGTGTCC
GGCCGCGGCA ACCTGCCCAT CGGTCAGTTC TCCGTCTTTA CGATGCTGGG CATCGATGGC
TTCTCGCCCC AGAGCGGGCG TAGCGGCACC GCGGTGAACA TCGATGGCCA GGGCTTCCAG
CACGGCGACA AGGTGTACCT CAATGGTCGC CCGCTGGTGG TGCAGTCGCT TACCCATGAC
CGTATCGTGG CCCGCATTCC GGCCAATGCT TCGACCGGTT ACCTCACGGT GCGTCATGCG
GACGGCGTGA GCGAGCGTTC GGCTCAGCGT TTCTACGTGA CCCAGGCGCA GCCGGTGATC
ACGTCCATGG CGCCGCTGAG CGGTGAGCCC GGCACCCAGG TGCGCCTGGT GGGCAACGAC
TTCGAGGCCG GCTGCAAGGT GTTCTACGGC CAGGATACCC TGCCTATCAA CTACCGCAGC
GACCGCGTCA TCAACGTGAC GATCCCCGAC TATGCCCGCA ACAACTTCCT CTACGTCAAC
TGCGCCGGGG AGCAGGCGCG CTCACCGCAG CGCTTCCGCG TCACCAAGGC CACGCCGGTG
GTCAGGCTGC CCAAGCAAGT GGATGCCGGC GAGCTGGTGA CCCTGCGCGG CGCCAACTTC
GATTCCAATC TGCGGATCTT CTGGGGCGCT CACGAGATGC GCGTGGTCAA GCGCAGCCGC
AACGGCAAGC GGATCCAGGT CCTCATCCCC TCGCACCTGC ACGGTCGTGA CTACGTGTCC
ACCATCGGTT CGTCCGGTCG CATGGAGCTC GGCGCGATGC AGATCATGCC CCGCTTCTAC
ACGACTCGCT AA
|
|---|
| Protein sequence | MKTLTSIVTA AFLLGTTASA MAETRPNTYV PSQRALQIHN FQPQSGGVGS YVTVNGSGLN
RVEYVLVGGY KVTPVQHSND QISFRIPSRH GNGEIRLHVS GRGNLPIGQF SVFTMLGIDG
FSPQSGRSGT AVNIDGQGFQ HGDKVYLNGR PLVVQSLTHD RIVARIPANA STGYLTVRHA
DGVSERSAQR FYVTQAQPVI TSMAPLSGEP GTQVRLVGND FEAGCKVFYG QDTLPINYRS
DRVINVTIPD YARNNFLYVN CAGEQARSPQ RFRVTKATPV VRLPKQVDAG ELVTLRGANF
DSNLRIFWGA HEMRVVKRSR NGKRIQVLIP SHLHGRDYVS TIGSSGRMEL GAMQIMPRFY
TTR
|
|---|
| |