| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_1310 |
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| Symbol | |
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| ID | 8543692 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | + |
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| Start bp | 1727134 |
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| End bp | 1734297 |
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| Gene Length | 7164 bp |
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| Protein Length | 2387 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 646386026 |
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| Product | YD repeat protein |
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| Protein accession | YP_003265761 |
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| Protein GI | 262194552 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01445] intein N-terminal splicing region
[TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGGCAA GACATCGTTA CTGCCCCGCG CGTTGCTCGA CCTCGGCGCC GGGCGCGCGC
CACCGCAGCG GCTCGGGCGC GGCCACGCGC GGCGGGGCAA ACGCCGCCGC CGCGCTCGCG
CCCCGATTCA CCTGGGCCGT CGCGGTGGCC GCCGCGGCGC TGGCCTTGGG CTGCGGAGCC
GATGGCGGCG CGTCGGGCGA CGTGCCGGGC AGCGCGGGCG CCACCGACGC CGAGCGCACG
GGGCTATCCG CGCGTGAACG GCCCGCCGGA CACCCGGCTC TGGGCGCACA ACGCATGTTG
CCAGCGGCGT TTTATGCCGC GGCGGAGGCC GACGACAGCG GCACGGTAGT GACCTCGTTC
TACACCCAGG CGCGCGCCAT CTTCACCGGC GCCAGCCCTC GGCAGACCGG CATGGACCCG
GAGACCATCG ACCCGATGCG GGCGTCGATC GTCACCGGCG CGGTGCTCGG CGCAGACGGG
GCGCCGCTGG CGCTCGCGCA GGTGTCAGTC CGCGATCACG CAGAGTACGG CGAAGCCCTC
AGCGATGCTC AGGGCGGCTT TGCCCTGGTC GTCAACAGCG GCGATCCGAT CACGCTCGAG
TTCGCGGCCT CCGGGCTGAT CACGGCGCAG CGCACGATCG AGCCGGAGAC CAACGAGTCA
CTCGAGCTCG ACGCGGTCAA GCTGATCGCC CGTGACACCG CGGTGAGCGC GATCGACTTC
GACGGCGCAA CCACGCTGCA AGTGCATCAC TCCACGCAGA TGAGCGACGC GCGTGGCGAC
CGCCAGCTCT CGCTGCTGTT CTACCCCGGC ACGGTCGCGA CCCTGCACAT GCCCGACGGC
ACCACCAGCA CGGTGGACGA GCTGAACGTC ACCAGCAGCG AGTTCACCGT GGGCGAAGAC
GGCACGGCCG CCATGCCGGC CGATATCGCC TTTGGCACCA TCTACACCTA TGCGGTCGAG
TTCTCGGCGG CCGAGATCGA GAGCGTCGGC GCCAAGCACG CGTTCTTCAA CCCGCCGGCG
ATGCTGTACC TCGACAACTT CCTCGATATT CCGGTGGGCG CGGCCGTGCC CGCGGGCTCC
TACGATCGCG ACACCACGCG TTGGGACGGC GAGGCCAGCG GACAGGTGCT CGAGATCCTC
AGCATCATCG ACGACGGCAT CAACCCGCCC ACGGTTGAAC TCGACCTTGT GGGCGAAGAC
CTGGCCGCGA CCGCGCAAGA GCTCGACGCA CTCAACATCA CGGCCGAAGA GCTCGAGTAC
CTGGCGACCA CCTACGAGGT CGGCGAGCAG CTCTGGCGCG TGCCCGTGCA GCACTTCACC
GCGCCGCACG ATCTCAACTT CCCCGGCGGC ATGCCGGAAG ACGCGATCGC GCCCGAGGAC
CTGGCGATCC TGCTCGCCAC CACGGGCCGC TGCCGCAAGG CGGGCTCGAT CATCGAGTGC
GAGAACCAAG TCCTCGGCGA GAGCCTGGCG GTGAGCGACA CGCCCTTTGC GCTCAACTAT
CGCTCCTCGC GCGTACTCGG CGGCCCCGGC TTCCAGATCG GCGTGAAATA CACGGGCGAC
GCCGTCCCCG ATAGTCTCGA CCACGCCCGC GTCGAGGTCA CGGTCGCCGG CCGCACCCTG
ACATCGACCT TTGCCGCCCC CGAGCCCGAG CAGACCACCT ACGTCCGCTG GGACGGCCTG
GACCTCGGCG GCAACCTGGT GCAGGGCGCG CAGCCGGCCC GGGTCTGCGT CACCTACGAC
TACTCTCCGG CCGCGCGTGC ACAGGCCGCC GTGGGCTTCA CCGACGTCTT CGGCAAGTGG
ACCGACGCCG GTCTACAGAT CGCCACCGAC ACCGGCGGCA GCGTCGCGCT CGGCAAGTGT
TACGGTCGCG GCGTCGCCGT CGGCGCCGAG ATTCCCGGCG TCGTCAACCA GGCCAATATG
CATCGATTGG GCGGATTTCT CGCCAAGAAC GCGGCCGTGG GCCTGGGCGG CTGGACGCTC
GACGTGCACC ACACGCTCGA CCCGCAGACC GGCACGCTGT ATCTGGGCAC CGGCGAAAGC
CGCGAAATCA AGAGCGCACA GCCCATGGCC GTACGCGTGG CCGGTAGCGG TCTGGATTAT
GGCCTCGACA CCGAGGCGAT ACCGGCGCTG GGCGTCCCCA TGGAACCGCA GGCGATCGCC
ATCGGACCCG ACAGCAGCAT CTACGTGGCC ACCGAGGGCC AGGTGCGCCA CGTGCTCCCC
GACGGCTCGT GGGTGCGCGT GGCCGGCACG GGGACGCCGG GTCTGGGCAG CTTCGGCGGC
GTCGCCCGCG ATACCGCTAT CGGGGACGAC CTGGTCGGCC TCGAGCTGGC TGCCAACGGC
GACCTGTTCA TCGCCGACCG CGGCAACCGG CTGATCTGGA TGCTGCGCGA TGGCCTGCTG
CACCGCGTGG CCGGCAACCT CGATGTGGGC TCGACCGCCG ACATGGATGT CGGGTTCTCC
TGGTTCGATG AAGAGCCGGA GTTCGACGCG ATCAACGGCG TCTGGGTACA GGGCCTCAGC
CGGGGCACGA GCTATCCGCA GCACGCGCAT CTGCGATGCC TCGAGAGCAT TCACCTCGCC
AACGCCGGTC AAGGCATGTG GATCGCGCAA TCCTGCGGCA GCTCCGGCGA TCAGCGCATC
CGCTATTTCT CCCTCTCCGG CGACCTCACC GAGCTCGATG GGCCCGCGTG GAGCGGCGCG
CACCCCGACA CCGGCGAGTA CTACCGCAAC CGCGCCCGGA TCTCGCACAC CGCCGGCTGG
CCCTATCCCG ACTGGGTGGA CGTGACGAAG CGGCCCAAGC GACGGGTCGG CGGCAAGAAC
CCCGACCACC ATCACTGGGG CTGGTACAGT GCGTTCGGCG CCGACAACCT GCCCTCGCCG
GCGGGCGTGG CCTTCGGGGA GGAGTGGGCG CTCTGGAAGC AACCGCACTC CATCGTCGCC
GCCCCCGGCA AGCTCTACGT CGCCGAGGGC AAGGGCAACG GCGACGTGAG CCGCATCCGC
CAGGTGAAGC TCGGCTCGGG CACCAGCACG CTGGGCTTAC GGCTCAGCAT CGAGAAGGAC
GATGAAGGCC GCTACCCCTG TAACAGCTCA CACTGTAGCT GGGACGTGGT CGGCGACGAC
GGTATCGAGG AATCGATAGG TCAGCTGGCG CTCAATCAAG GCAAGCTCTA CTACAGCACG
ATCACCAACA ACGAGCCCGG CGTGTTCATG CAGACCGGCG TCGGCAACGA TGGCTTGCCG
GGCCGGCGCG TCCTCGGCGG CGGAGATGAG CGCATCGAGG ATGAGGTGCT CATGACGCCG
GCGCTGAGCT ACGACCTGCG CCGCCCGGCC GATGTGAAGT TTGGACCCGA CGGCGCGCTC
TACGTCGCCG ATCGCGATGG CCTCAAAGTC GTACGCGTGT CCGTCGTCTC CACCGCCGGC
TACCATGGCA ACGTGGTCGC CAGCGAAGAC GGCACCGAGT ACTATGTGTT CGACGCCGAC
GGCCGGCATC TGTCGACCCA CGACAGCTTG ACCCACGTGC TGGTGTACTC GTTTGCCTAC
GACGACAGCG GCCTGCTCAC CAGCGTCAGC GATCGCAACG GCAATATCAC CCAGATCCAC
CGCGACGCCA CCGGCAAGCC GCTTTCCATC GAGTCGCCCG CGGGGCGGCT CACCAGCTTG
GCCGTCCACC CGGACGGTTA TCTCGCCAGC ATGGCGGCGC CCAGCGGTGA CGCGCACAGC
TTCACCTATA GCGGCGACGG TCTGCTCGCG TCGATGCTCA CGCCGGAGTC CCGGCTCTAC
ACCTTCGACT ACGACGACGA CGGCCGCTTG ATCGCCGACA CCGACGCGGC CGGGCGCACC
CAGACCCTGG CGCTGCTCGA GCACACGCCC GCGCGCCGGG TCGTGCGCCA TACCGACCCA
TCCGGCGTGG TTACCGACTA CGCGGTCGAC CACCTCGGCA GCGAGGACGA GATGTCATTC
TCGCAGACCT GGCCCGACGG CACGGTGTCC AGCCGGCGCA CTTTTGCGGA TGGCCGGGTG
CAGACCCACG AACGCGACGG TACCGTGGTC ACGGTGGAGC GCGCGGTGCA CCCGCAGCTC
GGGGTCACGA CTTCGTATAT CAGCCGCGCC GAGATGGTGG CTCCCGGCGG CGGCCCCACC
GTGGTCGCCA CGCGTGAGAT CACGGTCGAT TCCGCGTGCT CGCTGTTCCA CGCCGAGCCC
TGCGCCCCCG AGACCCTGGC GCATGACGAG CTCTACGCCG ATCGCGTCAC CGAGATCACG
AGCATCGAGG GCGCCGCGCC CGTGCACCGC GTGATGCGCC GCTTCACCCG TGCGCACAGC
GACGGCGTGG ACGATATCCC GGCCGAGCTG CTCGTGGTCA GCGCCGAGGA CCGCGCCAGC
CGGGTCCTCT TCGACGAGCT CGGCCGCAAG AGCGTGGCCC AGCTCGGCAC CTGGGACGGA
GCCGAGTTCG TCCACGGCGG CTTCGACGAT TTGAGCTACA GCTATCACCC CGATGGCCGG
CTCGCCAGCC GCCAGGAGGG CAGCGGTAAC GGCGCCAACC TGCGCACCTA TTCCTATGTC
GACGACGTCG CCGGTGTCAC GCTCAGCGCC TCGTCGAACG GCGCCGGGGT GTCGGTCTCG
TTCGATGTCG ACGGCTGGCT GCAGACCGTC GATTCCGCGC TCGGGGTTAC CCACTTCGCC
ATCGACGGCG ACGGCGAGGT CACCGGCTAT CGCCCGCCGC TCGACGATTG GCATATCTTC
GATTCGATCG CAGACGACCA GGATGAGGTC TACCAGCCTG CATCCGGTAC CGCGCTCGAG
TCGTCGATCA GCTACGAGTA TCGTCCGGAC CTGCAGCTCT CGTCGGTCAC CGAGCCGGGC
GCGTCCGTGA CCAGCTACGG CTATGACAGC GTCGGACGAG TGGACAGTAT CACCAGCGTT
GACGGCTTGT TGTCGCTGAG CTACGCGGCC GAGGGGTATG TCGACGTGGT CACCGACCCC
GCGGGCGGGA CTCTCGATTT CGACTATCTC GACGGCGCCC CTCACGCGCT CACGCGCGAT
GGCGCCGAGT CGCCCAGCGG CGAGCACACC GTGTCCTGGC AGTACGATCC GCTGATGCGG
CTCGACGCCG AGAGTATCGA TGGCGGCTCG AGCATCAGCT ACCAGTACGA TCGCGATGGT
CTGCCGACCG CGGCCGGTGC GCTCAGCATC GCGCGCGAGG CCGTGACCAC GGCGGTGGAC
ACGATGGACC TCGGCACGGT CCACACCGAA ATCGAGTACG ACGCGCGCAC ACGGCCGTCG
CTGCTCCGCT ATAGCACCGG CGGCGGGACC CTGTACCAGG TTGCCCTGGC GTACCACGAC
GACGGCCGCA TCGACAGCGC CACCGAGACG ATTGGCGGCA TCGCGACCAG TACGAGCTAT
AGCTACGATG CCAGCGGCCG CCTGGCCTCG GTCGCGATCA CCGGGTTTCC GGTCCAGTGG
TACCAATACG GCAGCTATTA CGATTGGTCG AGCGTGACCC GGGGCGGAGT CGCCGTCAGC
CCCAGCTTCG ACAGCCACGG ACGTCTCGAC CAGTTCGAGG GCGCGACCTA CGCCTACGAC
GCCGCGGGCC GGCGCGTGTC CCGCAGCGCG CCCGGCGACA ACCAGAGCTA CCTCTACAGC
GCCACCAGTC AGCTCGTCGA GGTCGGTGGC GGCAGCGCGA CGGTCAACTA CCTGCACGAC
GGCCTCGAGC GGCGCGTGGC CAAGTTCGTC GACGGCGTGC TCGAGCGCGG CTGGCTGTAC
CGCTCGCCGT ATCAGCCGGT GGCCGAGCTC GACGCCAGCG GCGCGGTGGT GAGCCGCTTC
GTCTACGCCA CGCGCACCAA CGTGCCCGAC TACCTGATCC GCGGCGGCCA GACCTACCAG
CTCCTCACCG ATCCCCGCGG CAGCGTGCGC CTGGTGGTCG ATACCGCGAC CGGTGCCGTC
GCCCAGCGCA TCGATTACGA TGTCTGGGGT CGAGTGCTCG CCGACAGCAA CCCCGGCTTC
CAGCCATTTG GCTTCGCCGG CGGCCTCTAC GACCCCGACA CCGGTCTCGT GCACTTCGGC
GCGCGCGACT ACGATCCGCG CACCGGCCGC TTCCTGCAGA CCGACCCGCG CCTCTTCGGC
GGCGGCTACG ACAACCTGTA CGCCTACAGC GGCTTCGATC CCGTCAACTA TATCGACCGC
ACGGGCGAAG TCCCGCAATG GCTGCTCGAC GGCTTCACCT GGGCCGACCA GGCCGGCGTC
GACGATTTCA TCATCGGTAT GGGCGACGGC GCCACCCTGG GAATCTCCGC CGAGCTGCGC
GAGGCCATCG GCATGAACGA CCTGGTCGAT GACTGTAGCT GGGCCTACGT GGCCGGTGAC
TACGCGGGCG CGGCCCTGGT CGGCGGGATG GCGAAGCGGC TCAAGGGCGC GCCCAAGAAA
GCCCCGAAGC GCGGCTGCTT TGTCGCCGGT ACCGAGGTGC TCCGCGACGG CGAGCAGGTG
GCCATCGAGG AGGTTGTGGC CGGTGACCGC GTGGCCTGCG CCGATCCGAT TTCGTCCACG
TGGACGACGT GCGAGGTTGA GGCGGCGCTA TCGCGCGACT ACGAGGGCGA ACTCGTCGGC
GTCGGCATCG GCAGCGGCGG CGATGTCGTC GAGGCCACGG CCGGGCACCC GTTCTGGGTG
ATCGCGGGTG AAGCGCTGGC GGCGCGACCC ATCGCCCGCG ACGCTGGCGA GGACGCGCTG
GTGAGCGGTG ACGGTGGTGC GCGCTGGGTC GCTGCGCGCG ATCTACGCGT CGGCGACGCC
GTGCTGCTGG TCGGCGGGGA GCGCGCTGAG GTGAGCTCGG TGGCTTCGAG TTCGGCCGTG
ATCCGGGTGT ACAACCTGGC GATCGCCGAG CACGCGACCT ACGCCGTCGG CGAGCTCGGC
GCGCTGGTCC ACAACGACGA CGATTGCTAC AAGGTGCGTA ATCGCGATAG ACGCAACAAC
GGCGATCGCA AGCGGCCGGG CGAGGGTTTC CGCGGCGGCA AGAAGAACAA GCGCGACCGC
AACTTCGGCA TCCGCGACAA AGGCTTCTGG AAGTGGTGGG AGCAAAAGGG CAAGTACGCC
TGGGGCGACA AGGACCTCGC CCACGACACC GCCAAGCAGG CCTACGAAGA GTGGAAGAGC
CTCGGCAAAC CGGTGCCCAA ATAG
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| Protein sequence | MLARHRYCPA RCSTSAPGAR HRSGSGAATR GGANAAAALA PRFTWAVAVA AAALALGCGA
DGGASGDVPG SAGATDAERT GLSARERPAG HPALGAQRML PAAFYAAAEA DDSGTVVTSF
YTQARAIFTG ASPRQTGMDP ETIDPMRASI VTGAVLGADG APLALAQVSV RDHAEYGEAL
SDAQGGFALV VNSGDPITLE FAASGLITAQ RTIEPETNES LELDAVKLIA RDTAVSAIDF
DGATTLQVHH STQMSDARGD RQLSLLFYPG TVATLHMPDG TTSTVDELNV TSSEFTVGED
GTAAMPADIA FGTIYTYAVE FSAAEIESVG AKHAFFNPPA MLYLDNFLDI PVGAAVPAGS
YDRDTTRWDG EASGQVLEIL SIIDDGINPP TVELDLVGED LAATAQELDA LNITAEELEY
LATTYEVGEQ LWRVPVQHFT APHDLNFPGG MPEDAIAPED LAILLATTGR CRKAGSIIEC
ENQVLGESLA VSDTPFALNY RSSRVLGGPG FQIGVKYTGD AVPDSLDHAR VEVTVAGRTL
TSTFAAPEPE QTTYVRWDGL DLGGNLVQGA QPARVCVTYD YSPAARAQAA VGFTDVFGKW
TDAGLQIATD TGGSVALGKC YGRGVAVGAE IPGVVNQANM HRLGGFLAKN AAVGLGGWTL
DVHHTLDPQT GTLYLGTGES REIKSAQPMA VRVAGSGLDY GLDTEAIPAL GVPMEPQAIA
IGPDSSIYVA TEGQVRHVLP DGSWVRVAGT GTPGLGSFGG VARDTAIGDD LVGLELAANG
DLFIADRGNR LIWMLRDGLL HRVAGNLDVG STADMDVGFS WFDEEPEFDA INGVWVQGLS
RGTSYPQHAH LRCLESIHLA NAGQGMWIAQ SCGSSGDQRI RYFSLSGDLT ELDGPAWSGA
HPDTGEYYRN RARISHTAGW PYPDWVDVTK RPKRRVGGKN PDHHHWGWYS AFGADNLPSP
AGVAFGEEWA LWKQPHSIVA APGKLYVAEG KGNGDVSRIR QVKLGSGTST LGLRLSIEKD
DEGRYPCNSS HCSWDVVGDD GIEESIGQLA LNQGKLYYST ITNNEPGVFM QTGVGNDGLP
GRRVLGGGDE RIEDEVLMTP ALSYDLRRPA DVKFGPDGAL YVADRDGLKV VRVSVVSTAG
YHGNVVASED GTEYYVFDAD GRHLSTHDSL THVLVYSFAY DDSGLLTSVS DRNGNITQIH
RDATGKPLSI ESPAGRLTSL AVHPDGYLAS MAAPSGDAHS FTYSGDGLLA SMLTPESRLY
TFDYDDDGRL IADTDAAGRT QTLALLEHTP ARRVVRHTDP SGVVTDYAVD HLGSEDEMSF
SQTWPDGTVS SRRTFADGRV QTHERDGTVV TVERAVHPQL GVTTSYISRA EMVAPGGGPT
VVATREITVD SACSLFHAEP CAPETLAHDE LYADRVTEIT SIEGAAPVHR VMRRFTRAHS
DGVDDIPAEL LVVSAEDRAS RVLFDELGRK SVAQLGTWDG AEFVHGGFDD LSYSYHPDGR
LASRQEGSGN GANLRTYSYV DDVAGVTLSA SSNGAGVSVS FDVDGWLQTV DSALGVTHFA
IDGDGEVTGY RPPLDDWHIF DSIADDQDEV YQPASGTALE SSISYEYRPD LQLSSVTEPG
ASVTSYGYDS VGRVDSITSV DGLLSLSYAA EGYVDVVTDP AGGTLDFDYL DGAPHALTRD
GAESPSGEHT VSWQYDPLMR LDAESIDGGS SISYQYDRDG LPTAAGALSI AREAVTTAVD
TMDLGTVHTE IEYDARTRPS LLRYSTGGGT LYQVALAYHD DGRIDSATET IGGIATSTSY
SYDASGRLAS VAITGFPVQW YQYGSYYDWS SVTRGGVAVS PSFDSHGRLD QFEGATYAYD
AAGRRVSRSA PGDNQSYLYS ATSQLVEVGG GSATVNYLHD GLERRVAKFV DGVLERGWLY
RSPYQPVAEL DASGAVVSRF VYATRTNVPD YLIRGGQTYQ LLTDPRGSVR LVVDTATGAV
AQRIDYDVWG RVLADSNPGF QPFGFAGGLY DPDTGLVHFG ARDYDPRTGR FLQTDPRLFG
GGYDNLYAYS GFDPVNYIDR TGEVPQWLLD GFTWADQAGV DDFIIGMGDG ATLGISAELR
EAIGMNDLVD DCSWAYVAGD YAGAALVGGM AKRLKGAPKK APKRGCFVAG TEVLRDGEQV
AIEEVVAGDR VACADPISST WTTCEVEAAL SRDYEGELVG VGIGSGGDVV EATAGHPFWV
IAGEALAARP IARDAGEDAL VSGDGGARWV AARDLRVGDA VLLVGGERAE VSSVASSSAV
IRVYNLAIAE HATYAVGELG ALVHNDDDCY KVRNRDRRNN GDRKRPGEGF RGGKKNKRDR
NFGIRDKGFW KWWEQKGKYA WGDKDLAHDT AKQAYEEWKS LGKPVPK
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