| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_0417 |
|---|
| Symbol | |
|---|
| ID | 8542797 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 575241 |
|---|
| End bp | 576986 |
|---|
| Gene Length | 1746 bp |
|---|
| Protein Length | 581 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 646385214 |
|---|
| Product | protein of unknown function DUF885 |
|---|
| Protein accession | YP_003264951 |
|---|
| Protein GI | 262193742 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4805] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.974704 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACGCTC TATCCCGATA TCTCCTCGCG GCCGTGCTCG CGGCCGCCGC CACCGCGTGC
GGTGCCAAAG ACGGCAACGC GCCCACCAAC GCCAGCGCGC CCGCGAGCGC CCACGGCGAC
AGCGAAGCGT TTCGCGCCTT TGTGCACGAA TTCCGCGAAG CTACCCTGCG CGAGCGCCCG
GACATGGCCA TCGACCTCGG CCGCCACGAG TTCGACGGCC AGCTCGCCGA CTGGAGCCGC
ACCGGCCTCG ACCGCCAGAT CGCGCGCCTG CACCAGGACC TCGAGCGCGC GCACGGGTTT
TCGGACGAGG GTCTGAGCGA GCCCGAGCGC TTCGAACGCG ACTACCTGAT CGCGTACATC
GATCGCGAGC TGTTCTGGCT CGAGGAGGCC GATTGGCCGG CGCGCAATCC CTTCTTCTAC
CTCATGCGCC TCGATCCGGG CGTGTATCTC ACCCGCGAGT ACGCGCCGCT GAAGCAGCGC
ATGGCCGCGT TCACCCAGAT GGCCGAAAAA CTGCCGAGCG CGCTCGAGCA GGCGCGCGAG
AACCTGCGCA CGCCGCTGCC CAAGACCTAC GTGAGCCTGG GCGCCAACAT GGCCCGGGGC
GCGGCCGCGT TCCTGCGCGA CGACGTCCCA CAGATTTTCG ACGCAGTGGA CGACAAAGAG
CTGCAGCGCG CCTTCGACGT GGCCAACCTC GCCGCCGCCC TGGCCTACGA GGAGCTGGCA
GTGTGGTTCG CGGCGCAGGA GGCCAGCGCG ACCGACGAGT TCGCGCTCGG CAGCGAGCTG
TACGCGCGCA TGCTCGCGCA GACCGAGATG GTCACCACGC CGCTCGACGA GCTCGAGCGC
ATCGGCCGCG CCGACCTCGA GCGCAACCTC GCCGCCCTGG CCTCGGCCTG CGCCGAGATC
GCGCCCGAGC ACAGCATCCC GGCCTGCGTG GCCATGGTCC AGGCCGACAA GCCCGAGGTC
GGCCCGGTGC TGCGCGCGCG CGCTCAGCTC GAGGAGCTGG CCGATTTCCT GGCCCGCGCC
GACCTGGTCA CCGTGCCCGG CCCGGAGCGC GCCCTGGTCG AGGAGTCGCC GCCCTACAAC
CGCTGGAACT CGGCGTACAT CTCGGTGCCC GGCGCCTTCG AGCACAACGT GCCCTCGATC
TACTACATCG CGCCGCCCAA CCCGGCGTGG ACCGAGGCCG AGCGGCTGTC GTACATCCCC
GGCGAGACCG ACCTCTTGTT CACCTCGGTG CACGAGGTCT GGCCCGGACA CTTCTTGCAG
GGTCTGCACG CCAACCGCAG CGAGATTGAA TTCGCGCACA TCTACCGCAG CTACGCGTTT
AGCGAGGGCT GGGCGCACTA CGCCGAAGAG ATGATGTGGG AGGCCGGCCT CGGCGACGGC
GACCCGCGCG TGCACGTGGG CCAGCTCCTC AACGCGCTGC TGCGCAACGT GCGCTTCCTC
TCGGCCATCG GTCTGCACAC CCAGGGCATG ACGGTGGCCG AATCCGAGCA GATGTTCCGC
GAGCAGGCCT TCCTCAACCC CGGCGGCGCC CGCCAGCAGG CCGCGCGCGG TACCTTTGAC
CCGGCGTATC TCAACTACAC CCTGGGCAAG CTGGTGATCC GCAAGCTGCG CGAGGACTGG
ACCGCGTCGC GCGGCGGACG CGCGGCCTGG AAAGAGTTCC ACGACACGCT GCTGTCCTTC
GGCGCGCCGC CGCTGTCGCT GGTGCGCCGG GCCATGCTCG GCGCCGACGC CGGGCCGGCG
CTGTAA
|
|---|
| Protein sequence | MHALSRYLLA AVLAAAATAC GAKDGNAPTN ASAPASAHGD SEAFRAFVHE FREATLRERP
DMAIDLGRHE FDGQLADWSR TGLDRQIARL HQDLERAHGF SDEGLSEPER FERDYLIAYI
DRELFWLEEA DWPARNPFFY LMRLDPGVYL TREYAPLKQR MAAFTQMAEK LPSALEQARE
NLRTPLPKTY VSLGANMARG AAAFLRDDVP QIFDAVDDKE LQRAFDVANL AAALAYEELA
VWFAAQEASA TDEFALGSEL YARMLAQTEM VTTPLDELER IGRADLERNL AALASACAEI
APEHSIPACV AMVQADKPEV GPVLRARAQL EELADFLARA DLVTVPGPER ALVEESPPYN
RWNSAYISVP GAFEHNVPSI YYIAPPNPAW TEAERLSYIP GETDLLFTSV HEVWPGHFLQ
GLHANRSEIE FAHIYRSYAF SEGWAHYAEE MMWEAGLGDG DPRVHVGQLL NALLRNVRFL
SAIGLHTQGM TVAESEQMFR EQAFLNPGGA RQQAARGTFD PAYLNYTLGK LVIRKLREDW
TASRGGRAAW KEFHDTLLSF GAPPLSLVRR AMLGADAGPA L
|
|---|
| |