| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_1754 |
|---|
| Symbol | |
|---|
| ID | 8534912 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothiobacillus neapolitanus c2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013422 |
|---|
| Strand | - |
|---|
| Start bp | 1885588 |
|---|
| End bp | 1886556 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 646384136 |
|---|
| Product | protein of unknown function DUF6 transmembrane |
|---|
| Protein accession | YP_003263624 |
|---|
| Protein GI | 261856341 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5006] Predicted permease, DMT superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.568137 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCCACC CCCTTTTTGC TTTTCGGCGC GGCCACACTC TGGGTCAACT TATGTCCTCC
ATCCCTGAAT CTTTGGCGGT ACGTACATCT CGTTCCGCCC GTCATCATCC CTATTTCTGG
CCGTTGGTCG CCCTGCTGCT GCTCGGTTTG CTGTGGGGTT ATAACTGGGT GGTGATGAAA
GGCGGTTTGA GCGAGATTGC CGCGCTGTGG TTCGGCGCCC TGCGTACGAT CATTCCCGCC
GTGTTGCTGC TGCTCATGCT ACCTGCAACG GGCCGATCGC TCAGACCGCC GCCCATGCAT
TACGTTATTC CATTGGGGCT CCTGCAAACT GCCGGCTTTG TCGGCTTCAT GATGTGGGCG
TTGCAAACCG GTGCGGCGGG CGAGACAGCC GTGATCGTAT TCACCATGCC ACTCTGGCTG
ATGCTGATGG CGCATGTCGT ATTGCATGAA CGCTTGACCG GGCGCCAATG GCTGGCGCTG
GGCATCGCCG GTATCGGTTT GTTTTTCATG ATTGCGCCGT GGCGGGGGCA TCTGGCCGTT
GGTGCGTCGT TATTTGCCGT GTTGTCCGGT TTGACCTGGG CGGGCGGCTC GATCTGGCAG
AAGAAATTCG GCGCGCGCTA TAAGCTTGAT TTGCTCAACG TCACGGCCTG GCAGATGCTG
TTCGGTGGCT TTGCCATCCT GCTGGCCGCG GTGATGCTGG AGCCCTGGCA CGCCGAATGG
ACGCCGCATC TTTTGTGGGT TCTGTTCTAC AACATCGTTC CGGCGGGCGC GCTGGGCTGG
ATTCTCTGGA TTTACGCGCT GCACAATCTG CCTACCCGAT TTGCCGGATT TGGCTCGTTG
CTGATTCCCA GCGTCGGTGT GCTGGGCGCT TGGCTGCAAT TGGGCGAGCG GCCCGGTACG
TTCGAATTGA TCGGCATCAT CCTGATTCTT ATCGCCTTGC TTCTGTCGCT CCTGACGCGC
CGAAACTGA
|
|---|
| Protein sequence | MLHPLFAFRR GHTLGQLMSS IPESLAVRTS RSARHHPYFW PLVALLLLGL LWGYNWVVMK
GGLSEIAALW FGALRTIIPA VLLLLMLPAT GRSLRPPPMH YVIPLGLLQT AGFVGFMMWA
LQTGAAGETA VIVFTMPLWL MLMAHVVLHE RLTGRQWLAL GIAGIGLFFM IAPWRGHLAV
GASLFAVLSG LTWAGGSIWQ KKFGARYKLD LLNVTAWQML FGGFAILLAA VMLEPWHAEW
TPHLLWVLFY NIVPAGALGW ILWIYALHNL PTRFAGFGSL LIPSVGVLGA WLQLGERPGT
FELIGIILIL IALLLSLLTR RN
|
|---|
| |