Gene Hneap_1614 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHneap_1614 
Symbol 
ID8534772 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalothiobacillus neapolitanus c2 
KingdomBacteria 
Replicon accessionNC_013422 
Strand
Start bp1753244 
End bp1754725 
Gene Length1482 bp 
Protein Length493 aa 
Translation table11 
GC content54% 
IMG OID646384001 
ProductP-type conjugative transfer protein TrbL 
Protein accessionYP_003263489 
Protein GI261856206 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3846] Type IV secretory pathway, TrbL components 
TIGRFAM ID[TIGR02783] P-type conjugative transfer protein TrbL 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTACAA AATCCACAAA CATTTTGATT CTGACGACGA TCTGCCTGTT ATTGGCAACA 
TCGTCGGCAT CCGCCGCCTC TACGTCAACC GGCGGCATGA TGATGGATCT CATGGATCAG
TTTCACACCG CTTCTGTCAG TTGGACAACT CGTGCCCTGC AAATCGGGAA TTGGATTTTC
TATACCTTGG CCGTGCTTGA GTTGACGTGG GCTGCCGCTC TTTGGGTAAT GGAAAAGGAT
AGTGCCAGCT CATTGATTGT CGCTCTGGTA AGAAAATTCA TGGTGCTGGG GTTTTTCTAC
ACCTTTCTGA TTATGGCTCC GTCATGGATA CCGGCCATCA TTAATTCCCT ACAGGATACG
GGAGCCCAGA TTGGCGATAC TACCGTTGGC GCGGTCACTC CAATGAGTAT CGTTGGTCAT
GGAATCAATG TGATCAATGC CATCTGGAAA GCCTTTTCCA ATTCCGCTTT GGGGAGTCTG
AAAGCCATGG CTACTGCGAT TGTGATCGGG TTCCTTCTGA TAGCTGTGTC TATCGCCATC
ATGTTGTCGT TTATCTACAT TGCCATTGAA TATGTGATGA CCGTTATTGA ATCCTACATC
GTGGTGGGAA TGGGGCTTGT GTTGATGGGG TTTTCAGGGA GCCAGTGGAC ACGGGACTTT
TCCCAGAAAT ATATCGGGTA CGCATTTTCT GTTGGCGTGA AGCTCATGGT GTTGATGTTG
CTTTTGGCAA CCATCATCAC TGTCACAAAC ACTTGGCCAG CCGATGTACG AGCCACTTTC
ACCGGCAAGG ATATGTTCGC TTGGATTCAG CCTATGTTCA TGATTGCCGG ATCATCAATT
CTGATGGCAT TGCTCGCCAT TAAAATCCCC TCCCTTGCCT CATCCTTGCT CTCCGGCGCG
CCTTCTTTGG GCGGTGCCGC TGCGGTTGGG GCGGCGGCGG GCGCCGCTGC CGGGGTAGCG
GGCATGGCGG TTGGTGGGGC AAAATTGGCT GGAATGGCCG GGGCTGCGGG AGGTGCTGCC
ACCAAAGGCA TCGCGGCGGC TGCTGTTGGC GGTGCTGGCA TGGCTCAGGC TGTGGGCGCC
GCATCAAACC TTGCCACGGC ATCGGGCTTT ACACCGGGAT CAGCGGCTCA CATGGGGGCT
ACTGCGGGCA ACATGATCAA TGGACTCGGC GGCATGGCTG CAAATGGCAT GAAAAACTTA
TCGAATAAGG CCGGATCAGC GCTTGATGCG GCCACGCAAA GCGCTGGAAA AACATTCGAC
ACAGCCGTGT CAAATTCCAC TGGCGGCAAA CTGGCTGCAA GCCTGAATGA GAAAGCATCT
GGAAAGCAGA CTTCTAGTGG GAGCCAATTG GGCGGGGGGG GGCGAATACC CCAAGCGGTG
GTTCCGCCGC CACGGTTCCG CCGCCATCGC CCGGCGGTCA GGCGCCTGGC AATGGAAATA
ACCCAAATCA GCCCGCCCCG CCCAATGCGA GTCAGCATCT AA
 
Protein sequence
MSTKSTNILI LTTICLLLAT SSASAASTST GGMMMDLMDQ FHTASVSWTT RALQIGNWIF 
YTLAVLELTW AAALWVMEKD SASSLIVALV RKFMVLGFFY TFLIMAPSWI PAIINSLQDT
GAQIGDTTVG AVTPMSIVGH GINVINAIWK AFSNSALGSL KAMATAIVIG FLLIAVSIAI
MLSFIYIAIE YVMTVIESYI VVGMGLVLMG FSGSQWTRDF SQKYIGYAFS VGVKLMVLML
LLATIITVTN TWPADVRATF TGKDMFAWIQ PMFMIAGSSI LMALLAIKIP SLASSLLSGA
PSLGGAAAVG AAAGAAAGVA GMAVGGAKLA GMAGAAGGAA TKGIAAAAVG GAGMAQAVGA
ASNLATASGF TPGSAAHMGA TAGNMINGLG GMAANGMKNL SNKAGSALDA ATQSAGKTFD
TAVSNSTGGK LAASLNEKAS GKQTSSGSQL GGGGRIPQAV VPPPRFRRHR PAVRRLAMEI
TQISPPRPMR VSI