| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_1215 |
|---|
| Symbol | |
|---|
| ID | 8529604 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | + |
|---|
| Start bp | 1316138 |
|---|
| End bp | 1323766 |
|---|
| Gene Length | 7629 bp |
|---|
| Protein Length | 2542 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | |
|---|
| Product | type 1 secretion target domain protein |
|---|
| Protein accession | YP_003258636 |
|---|
| Protein GI | 261820530 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAACGGTG TGATTGGTGT TATTAAATTC GTTATTGGGC AAGTTTTTAT CGTTGCGCTT
GATGGGAGCC AGAGGCTGCT CGTTGCTGGC GATCGGGTTT ACAGCGGTGA AGAAGTGGTG
ACCGGTGCTA ACGGCGCGGT TTCGATCACA TTACCTGATG GCAAGACACT GGATCTGGGG
CGTGATAGCC GCTGGAGCGA TGTAAGTAGT GCGTCCTCTC AGACAAATGC GGATACCGCT
AATGATATCG CAGCTATACA AGATGCCATC GCTCAGGGCG CTGACCCAAC GCAAGTGCTA
GAGGCCGCTG CTGCGGGTAA TGATAACACA GGCGAAGCGG GTGACGGCGG TGGGAATCAC
ACTGCGGTCG TACTGGATTT GACCGGACAA ATAGTGGATC CAATAATCGG CTACCCAACC
GAAGGGATCA ATTTCGCAAT AAATAATGTC AATCAGACAG ACGGTTTTAA TACTCAAGCA
TTATTGGTTA CGCCATCCTC TCTGGAAAAT AACGACACTA TTACATTGAG TTCGGACGGA
CGGGTTGTTG AGGGCGGAAA AATTATCGTT ACGGCAACGG TAAATAACCC AGTCACTGGT
AGCGATCTTG TCATAACGTT AACAAATGGG TCAACGATTA CGATTCCAGT TGGGGAAACG
GGCACGTCCG TGACGATAGA TACGCGTGGT GATGATGCTT ATCGTCAAGG GGATGAATTT
GTCAATATTG GTATCGATTC TACCTCAGGC GGAAGTTATA CCAGCCTAGA TACCACTAGT
ACGACGACGA CGGTCGTTGG GGATAACAAT GACTCGACCA CCATCACCCT GAGTTCGGCC
AATGAGGTGA CGGAAGGGGG GATTATCACG GTGACGGCCA GGGTGGACAA CCCTGTGACG
GGGAGTCCGT TGGTGATTGA CATGGGGAAT AACGTCAGCA TTACCATTCC GGTTGGTCAG
AGCAGCGGCA CCGTTGATGT GGCTACGCGC CCGGACGATG CCTATCAGCA GGGCAATGTA
CCAGTCGAGT TCTCGATTGT GGGCACCTCT GGAGGCAACT ACGAAGCGCT GGATACGACC
AGCACCACCC GCACCACCGT TGTGGACAAC AATGACGGGA CCAAGATTAC ATTGGAAGGC
CCTGATACAG TTACTGAAGG TGAAGAGATC ACGATTATTG CCAGGGTCGA ATTACCGCCT
CAAGGTAGCG ATCTGGTCAT TCGGTTGACT AATGGGGAAA TTGTCACGAT TCCTGTTGGT
AAGACCGAAG GCTCTGTTAC CTATGCTGCA CGCGGCGATG ACAATCTGGT ACAGGGGGAT
ATTCCGCAAA CCGTAGGGAT TGAAACAGCA ACCGGCGGCA ATTACGAAAA TCTTGTCAAT
GGCGATCCTA TTGTTACTAC GGTGCAAGAC AACGATGTAC CGGTGCTGAC GGTGGGGGAT
GCGGGAACCG TGGCGGAAGG CCAGCCGGCG CGCTTTGAGA TTGCGCTGAG CAAGCCGGTG
GATGCGGCGA CCACGCTGAC CTTCACGGTA CGCCACGGCA GTACCGACGC GGACGACATC
GGCACGCCGA CGGTCACGAT AGCCGGGCAG CCGGTGGCGG TGACGGTGAA CGCGGACGGC
AGTTACAGCG TACCGGTGGC GGCCGGTACT ACCGACGGCA TTGTGGTGTC GGTGCCGACC
GTGGACGATG GGGTATTTGA AGGCAACGAG ACCTTTGAAC TGGTGGGCAC GCTGACCGGC
ACCACGGCGT CGGGCACCCC GCTGCCGGCC GGGATCGGTG ATACCGGGCA GGCGACCATC
AGCGATTTGA ATAGCACCGA TCCGCAAACC CCGAACCCGG GCGCGGATGT GCCGGTGCTG
ACGGTGGGGG ATGCGGGAAC CGTGGCGGAA GGCCAGCCGG CGCGCTTTGA GATTGCGCTG
AGCAAGCCGG TGGATGCGGC GACCACGCTG ACCTTCACGG TACGCCACGG CTCTACCGAC
GCGGACGACA TCGGCACGCC GACGGTCACG ATAGCCGGGC AGCCGGTGGC GGTGACGGTC
AACGCGGACG GCAGTTACAG CGTACCGGTG GCGGCCGGTA CTACCGACGG CATTGTGGTG
TCGGTGCCGA CCGTGGACGA TGGGGTATTT GAAGGCAACG AGACCTTTGA ACTGGTGGGC
ACGCTGACCG GGACCACGGC ATCGGGCACC CCGCTGCCGG CCGGGATCGG TGATACCGGG
CAGGCGACGA TCAGCGATTT GAACCGTGGC ACGCCGGACA ACCCGAGTGC CGGCGCGGAT
GTACCGGTGC TGACGGTCGG GGATGCGGGA ACCGTGGCGG AAGGCCAGCC GGCGCGCTTT
GAAGTTGCGC TGAGCAAGCC GGTGGATGCG GCGACCACGC TGACCTTCAC GGTACGCCAC
GGCTCTACCG ACGCGGACGA TATCGGCACG CCGACGGTCA CGATAGCCGG GCAGCCGGTG
GCGGTGACGG TGAACGCGGA CGGCAGTTAC AGCGTACCGG TGGCGGCCGG CACCACCGAC
GGGATTGTGG TGTCGGTGCC GACCGTGGAC GATGGGGTAT TTGAAGGCAA CGAGACCTTT
GAACTGGTGG GCACGCTGAC CGGCGCCACG GCGTCGGGCA CCCCGCTGCC GGCCGGGATC
GGCGACACCG GGCAGGCGAC CATCAGCGAT TTGAATAGCA CCGATCCGCA AACCCCGAAC
CCGGGCGCGG ATGTGCCGGT GCTGACGGTC GGGGATGCGG GAACGGTGGC AGAAGGCCAG
CCGGCGCGCT TTGAGATTGC GCTGAGCAAG CCGGTGGATG CGGCGACCAC GCTGACCTTC
ACGGTGCGCC ACGGCTCTAC CGACGCGGAC GATATCGGCA CGCCGACGGT CACGATAGCC
GGGCAGCCGG TGGCGGTGAC GGTGAACGCG GACGGCAGTT ACAGCGTACC GGTGGCGGCC
GGCACTACCG ACGGCATTGT GGTGTCGGTG CCGACCGTGG ACGATGGGGT ATTTGAAGGC
AACGAGACCT TTGAACTGGT GGGCACGCTG ACCGGGACCA CGGCATCGGG CACCCCGCTG
CCGGCCGGGA TCGGTGATAC CGGGCAGGCG ACCATCAGCG ATTTGAATAG CACCGATCCG
CAAACCCCGA ACCCGGGCGC GGACGTACCG GTGCTGACGG TCGGGGATGC AGGAACGGTG
GCGGAAGGCC AGCCGGCGCG CTTTGAAGTT GCGCTGAGCA AGCCGGTGGA TGCGGCGACC
ACGCTGACCT TCACGGTGCG CCACGGCTCT ACCGACGCGA ACGATATCGG CACGCCGACG
GTCACGATAG CCGGGCAGCC GGTGGCGGTG ACGGTGAACG CGGACGGCAG TTACAGCGTA
CCGGTGGCGG CCGGCACCAC CGACGGGATT GTGGTGTCGG TGCCGACCGT GGACGATGGG
GTATTTGAAG GCAACGAGAC CTTTGAACTG GTGGGCACGC TGACCGGGGC CACGGCATCG
GGCACGCCGC TGCCGGCCGG GATCGGCGAC ACCGGGCAGG CGACCATCAG CGATTTGAAT
AGCACCGATC CGCAAACCCC GAACCCGGGC GCGGACGTAC CGGTGCTGAC GGTGGGGGAT
GCAGGAACCG TGGCGGAAGG CCAGCCGGCG CGCTTTGAGA TTGCGCTGAG CAAGCCGGTG
GATGCGGCGA CCACGCTGAC CTTCACGGTG CGCCATGGCT CTACCGACGC GGACGACATC
GGCACGCCGA CGGTCACGAT AGCCGGGCAG CCGGTGGCGG TGGCGGTGAA CGCGGACGGC
AGTTACAGCG TACCGGTGGC GGCCGGCACT ACCGACGGCA TTGTGGTGTC GGTGCCGACC
GTGGACGATG GGGTATTTGA AGGCAACGAG ACCTTTGAAC TGGTGGGCAC GCTGACCGGG
ACCACGGCAT CGGGCACCCC GCTGCCGGCC GGGATCGGTG ATACCGGGCA GGCGACCATC
AGCGATTTGA ATAGCACCGA TCCGCAAACC CCGAACCCGG GCGCGGACGT ACCGGTGCTG
ACGGTCGGGG ATGCAGGAAC GGTGGCAGAA GGCCAGCCGG CGCGCTTTGA GATTGCGCTG
AGCAAGCCGG TGGATGCGGC GACCACGCTG ACCTTCACGC TGCGCCACGG CTCTACCGAC
GCGAACGATA TCGGCACGCC GACGGTCACG ATAGCCGGGC AGCCGGTGGC GGTGACGGTG
AACGCGGACG GCAGTTACAG CGTACCGGTG GCGGCCGGTA CTACCGACGG CATTGTGGTG
TCGGTGCCGA CCGTGGACGA TGGGGTATTT GAAGGCAACG AAACGTTTGA ACTGGTGGGC
ACGCTGACCG GGACCACGGC ATCGGGCACC CCGCTGCCGG CCGGGATCGG CGACACCGGG
CAGGCGACCA TCAGCGATTT GAATAGCACC GATCCGCAAA CCCCGAACCC GGGCGCGGAC
GTACCGGTGC TGACGGTCGG GGATGCGGGA ACCGTGGCGG AAGGCCAGCC GGCGCGCTTT
GAAGTTGCGC TGAGCAAGCC GGTGGATGCG GCGACCACGC TGACCTTCAC GCTGCGCCAC
GGCTCTACCG ACGCGGACGA TATCGGCACG CCGACGGTCA CGATAGCCGG GCAGCCGGTG
GCGGTGACGG CGAACGCGGA CGGCAGTTAC AGCGTGCCGG TGGCGGCCGG CACCACCGAC
GAGATCGTGG TGTCGGTGCC GACCGTGGAC GATGGGGTAT TTGAAGGCAA CGAGATCTTT
GAACTGGTGG GCACGCTGAC CGGCGCCACG GCGTCGGGCA CCCCGCTGCC TGCCGGGATC
GGTGATACCG GGCAGGCGAC CATCAGCGAT TTGAACCGTG GCACGCCGGA CAACCCGAGC
GCCGGCGCGG ATGTACCGGT GCTGACGGTC GGGGATGCGG GAACGGTGGC AGAAGGCCAG
CCGGCGCGCT TTGAAATTGC GCTGAGCAAG CCGGTGGATG CGGCGACCAC GCTGACCTTC
ACGGTGCGCC ACGGCAGTAC CGACGCGAAC GACATCGGCA CGCCGACGGT CACGATAGCC
GGGCAGCCGG TGGCGGTGAC GGTGAACGCG GACGGCAGTT ACAGCGTACC GGTCGCGGCC
GGCACCACTG ATGGGATCGT GGTGTCGGTG CCGACCGTGG ACGATGGGGT ATTTGAAGGC
AACGAGACCT TTGAACTGGT GGGCACGCTG ACCGGCACCA CGGCGTCGGG CACGCCGCTG
CCGGCCGGGA TCGGCGACAC CGGGCAGGCG ACCATCAGCG ATTTGAATAG CACCGATCCG
CAAACCCCGA ACCCGGGCGC GGATGTACCG GTGCTGACGG TGGGGGATGC GGGAACGGTG
GCAGAAGGCC AGCCGGCGCG CTTTGAGATT GCGCTGAGCA AGCCGGTGGA TGCGGCGACC
ACGCTGACCT TCACGGTGCG CCACGGCAGT ACCGACGCGG ACGATATCGG CACGCCGACG
GTCACGATAG CCGGGCAGCC GGTGGCGGTG ACGGCGAACG CGGACGGCAG TTACAGCGTA
CCGGTGGCGG CCGGTACTAC CGACGGCATT GTGGTGTCGG TGCCGACCGT GGACGATGGG
GTATTTGAAG GCAACGAAAC CTTTGAACTG GTGGGCACGC TGACCGGCAC CACGGCGTCG
GGCACCCCGC TGCCGGCCGG GATCGGTGAT ACCGGGCAGG CGACCATCAG CGATTTGAAT
CATGCACCGG TCACCGCCGA CCAGTCGATC CGTACCGAGG AAGATACGTC GGTCAGTGGC
ACTATTACGG CAAGCGATAT GGACGGTGAC ACGCTGAGTT ACGGGGTGGG TACGCCGCCG
CAGAACGGCA CGCTGGCGCT GGACAGCACC ACTGGGAAAT ACACGTACAC GCCGGCTGCC
AACTTTAGCG GCAGCGACCA CTTTACGGTC ACGGTGGCGG ACGGCAACGG CGGCACGGCA
ACCAGCACGG TGACGGTGGG CATTACCCCA GTAGCCGATG CGCCAGTCGT GAGCCTGAGC
TCTACCGTCG GTGCTACGAC GCCGGGTTCT GCGGAAATCA TCAAGGTGAA CGGAGGAAGT
GGGAAGTCCG GTGGGTTTGA TGTACAAGAT GGAAAAATTG TTAAGATCGG CAGTGGCGTG
CGCGTTTGGT TGACAGAGGG CGACACTGCG CCTACTGCTG CTAACTCTTC TGAACAGATT
AAGTATTACG GCAAAGATAA TGGCAATGGT AATCCTGGGG GATCGACAAG CTATGCTGAC
ATTTTTGTTG TTCATTCCAA AAGCGGTTAT TTCTACCGCC AGTCTGATTG GACTGAAGCA
CAGAAACAGT ATAACCAGCT TGATTCTGTC CACGGGAATA GTCAGTCACA GTCGAGTAAC
CCAGGTAAAG ATTATATCTT TGTCCAAAAA GAAGAGGGCT TTACCTATAA GGCTGAAAAT
TCGACGAATA ATAGAAATAA TAACTTCAAC ACAATGGATG GCGTGAAAGT TACTTATTCT
GACGGGAAGG GGCATTCGGG GGCTTTAATT AAGCAGGTAA GCAACCAGCT TGAAGGTGTG
ATCTACAGCG ATGGATCGAC ATATACCGCC GGAAATAGCG CGACAGTGGA CAAAGTACCC
GGTCAGGCGG GAAAACAGAT CTATACGCTC GATGTTTCAG CGGCATTGAC CGATCGTGAC
GGTAGTGAAA TGTTGTCAGG GATTCGGCTG ACGGGGATCC CGACGGGTAC GGTGCTGACT
GACCAGATCA ACAACGTGAA GTATACCGTG GGTGATGATG GTACATACCT GATTCAAAAT
GCGCACAATG CCCAAACTCT GGCTGGGAAG ATTACGCTTG AGGTGCCAGG TGATGGCGGT
AAATTGAATG TCATCGCGCA GGCGACATCG ACAGAAATTA GCAACCACGA TACGGCAACG
GGCTATTCGG CGGAAGGCGC TGAGCAGTAT GGATTGAGTG TCGGTACGGC AGGTAACGAT
ACGATGTCCG GCACGTATAA TGATGATGTT CTGTTCGGCG ATGTCGTATC GTTCCCGAAT
ATCGATGGCA ATGGTATCAC TGCTTTGCAG AACTACATTG GTAAGCAGTT AGGTATGCAA
ACGGGTGTGC CGACCACGAA GGACATGCAT AACTATATTG CGTCGCATAG CTCGGAGTTT
GATCTGTCGC CAGCCAAAGG AGGGAATGAC ATACTCAATG GCGGTGACGG GGATGACATC
CTTTTCGGTC AGGGCGGCAA TGATACCCTC TACGGTGGTG CAGGGAATGA CTTGCTCTAC
GGCGGTAGCG GAGACGACAT CCTGATTGGC GGCGCAGGGG GGGATACGCT TATCGGTGGT
GCGGGTGCGG ATACCTTTAA ATGGCAGGCT GGTGATATTG GCAACGATGT GATCAAAGAC
TTTAATGCCA AAGAGGGTGA CCGGATAGAT CTAAGTGATT TGATTGGTGA GTTAGAGCAA
GGAACCGATA TCAGTCGCTA TATTCGCATC ACAGATAGCC AGGGTTCTCC GGTGATTGAA
GTGAGCACGG CAGGGAACTT TACGGCAGAT AAAGGCGGAA CGGTTGCGGT GTCGATTACG
TTGGAACATT ATAACGGTGC ATTACCGTCG CTTGAAAGTC TGGTGAGTAA ACCTGAACAG
CCCCATTGA
|
|---|
| Protein sequence | MNGVIGVIKF VIGQVFIVAL DGSQRLLVAG DRVYSGEEVV TGANGAVSIT LPDGKTLDLG
RDSRWSDVSS ASSQTNADTA NDIAAIQDAI AQGADPTQVL EAAAAGNDNT GEAGDGGGNH
TAVVLDLTGQ IVDPIIGYPT EGINFAINNV NQTDGFNTQA LLVTPSSLEN NDTITLSSDG
RVVEGGKIIV TATVNNPVTG SDLVITLTNG STITIPVGET GTSVTIDTRG DDAYRQGDEF
VNIGIDSTSG GSYTSLDTTS TTTTVVGDNN DSTTITLSSA NEVTEGGIIT VTARVDNPVT
GSPLVIDMGN NVSITIPVGQ SSGTVDVATR PDDAYQQGNV PVEFSIVGTS GGNYEALDTT
STTRTTVVDN NDGTKITLEG PDTVTEGEEI TIIARVELPP QGSDLVIRLT NGEIVTIPVG
KTEGSVTYAA RGDDNLVQGD IPQTVGIETA TGGNYENLVN GDPIVTTVQD NDVPVLTVGD
AGTVAEGQPA RFEIALSKPV DAATTLTFTV RHGSTDADDI GTPTVTIAGQ PVAVTVNADG
SYSVPVAAGT TDGIVVSVPT VDDGVFEGNE TFELVGTLTG TTASGTPLPA GIGDTGQATI
SDLNSTDPQT PNPGADVPVL TVGDAGTVAE GQPARFEIAL SKPVDAATTL TFTVRHGSTD
ADDIGTPTVT IAGQPVAVTV NADGSYSVPV AAGTTDGIVV SVPTVDDGVF EGNETFELVG
TLTGTTASGT PLPAGIGDTG QATISDLNRG TPDNPSAGAD VPVLTVGDAG TVAEGQPARF
EVALSKPVDA ATTLTFTVRH GSTDADDIGT PTVTIAGQPV AVTVNADGSY SVPVAAGTTD
GIVVSVPTVD DGVFEGNETF ELVGTLTGAT ASGTPLPAGI GDTGQATISD LNSTDPQTPN
PGADVPVLTV GDAGTVAEGQ PARFEIALSK PVDAATTLTF TVRHGSTDAD DIGTPTVTIA
GQPVAVTVNA DGSYSVPVAA GTTDGIVVSV PTVDDGVFEG NETFELVGTL TGTTASGTPL
PAGIGDTGQA TISDLNSTDP QTPNPGADVP VLTVGDAGTV AEGQPARFEV ALSKPVDAAT
TLTFTVRHGS TDANDIGTPT VTIAGQPVAV TVNADGSYSV PVAAGTTDGI VVSVPTVDDG
VFEGNETFEL VGTLTGATAS GTPLPAGIGD TGQATISDLN STDPQTPNPG ADVPVLTVGD
AGTVAEGQPA RFEIALSKPV DAATTLTFTV RHGSTDADDI GTPTVTIAGQ PVAVAVNADG
SYSVPVAAGT TDGIVVSVPT VDDGVFEGNE TFELVGTLTG TTASGTPLPA GIGDTGQATI
SDLNSTDPQT PNPGADVPVL TVGDAGTVAE GQPARFEIAL SKPVDAATTL TFTLRHGSTD
ANDIGTPTVT IAGQPVAVTV NADGSYSVPV AAGTTDGIVV SVPTVDDGVF EGNETFELVG
TLTGTTASGT PLPAGIGDTG QATISDLNST DPQTPNPGAD VPVLTVGDAG TVAEGQPARF
EVALSKPVDA ATTLTFTLRH GSTDADDIGT PTVTIAGQPV AVTANADGSY SVPVAAGTTD
EIVVSVPTVD DGVFEGNEIF ELVGTLTGAT ASGTPLPAGI GDTGQATISD LNRGTPDNPS
AGADVPVLTV GDAGTVAEGQ PARFEIALSK PVDAATTLTF TVRHGSTDAN DIGTPTVTIA
GQPVAVTVNA DGSYSVPVAA GTTDGIVVSV PTVDDGVFEG NETFELVGTL TGTTASGTPL
PAGIGDTGQA TISDLNSTDP QTPNPGADVP VLTVGDAGTV AEGQPARFEI ALSKPVDAAT
TLTFTVRHGS TDADDIGTPT VTIAGQPVAV TANADGSYSV PVAAGTTDGI VVSVPTVDDG
VFEGNETFEL VGTLTGTTAS GTPLPAGIGD TGQATISDLN HAPVTADQSI RTEEDTSVSG
TITASDMDGD TLSYGVGTPP QNGTLALDST TGKYTYTPAA NFSGSDHFTV TVADGNGGTA
TSTVTVGITP VADAPVVSLS STVGATTPGS AEIIKVNGGS GKSGGFDVQD GKIVKIGSGV
RVWLTEGDTA PTAANSSEQI KYYGKDNGNG NPGGSTSYAD IFVVHSKSGY FYRQSDWTEA
QKQYNQLDSV HGNSQSQSSN PGKDYIFVQK EEGFTYKAEN STNNRNNNFN TMDGVKVTYS
DGKGHSGALI KQVSNQLEGV IYSDGSTYTA GNSATVDKVP GQAGKQIYTL DVSAALTDRD
GSEMLSGIRL TGIPTGTVLT DQINNVKYTV GDDGTYLIQN AHNAQTLAGK ITLEVPGDGG
KLNVIAQATS TEISNHDTAT GYSAEGAEQY GLSVGTAGND TMSGTYNDDV LFGDVVSFPN
IDGNGITALQ NYIGKQLGMQ TGVPTTKDMH NYIASHSSEF DLSPAKGGND ILNGGDGDDI
LFGQGGNDTL YGGAGNDLLY GGSGDDILIG GAGGDTLIGG AGADTFKWQA GDIGNDVIKD
FNAKEGDRID LSDLIGELEQ GTDISRYIRI TDSQGSPVIE VSTAGNFTAD KGGTVAVSIT
LEHYNGALPS LESLVSKPEQ PH
|
|---|
| |