Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pecwa_0262 |
Symbol | |
ID | 8528624 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium wasabiae WPP163 |
Kingdom | Bacteria |
Replicon accession | NC_013421 |
Strand | + |
Start bp | 292948 |
End bp | 294885 |
Gene Length | 1938 bp |
Protein Length | 645 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | |
Product | regulatory protein CsrD |
Protein accession | YP_003257723 |
Protein GI | 261819617 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0339804 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGATTTA CGACCAGATT CTCTATACTC GTGATATTGC TGACGGCACT CGCCATTTTC CTTATGCTTT TCAGTAGTAT ATTTAGCCTC TGTTATTATA GCCAGTCGCA AACAGCGCAG CAGTTACGTG AGGTCACGGC CAGTATCGAT CAGGCGTTAT TAGTGCAATC GCCTGAAAAT ATCCGGTATT GGCTGCCGGG GATGATGAAA ACGGCGGGAA TTGTCGCGCT GGAGATCCAG GATAGCGATT CGATCCTCTA TGCAATACAG TTGCCCGAGG CCAGTTGGGA ACGGGCGCAT CTCTATCATG AAGTCGAATT CCCGCTGATG CATCATTTGA ACATGACGAT CGCCTTAAAG TATGTCGATC CGCTGATTGG TTTACCGCGC TTTGTGGTGT CGACGCTGTC GGTGTTACTG GCCGCAAGCC TGATGCTCCT GATGCTTTAC TTCTCCATTC GCTGGCTACG CCGCCAGACT GCCGGACAGG AAGAGTTGGA AAAGCGAGCG CAGCGTATTC TCAAAGGCGA ACGTGAATCG GTGATGCAGG GGGCAGTACA TGAATGGCCC GTCAATACCA GCGGGGCACT CGACCAACTG TTGTCTGATT TAGTGGAAGC GCGTGAGGAA CGCGGGCGGG TTGATACCTT AATTCGTGCC TTTGCCGCGC AGGATGCTGA AACCGGGCTA AACAATCGTC TGTTTTTTGA TAATCAACTG ACCACGCAGT TGGAAGATGG CGAAGAGGTG GGGACACACG GCATCGTTAT GATGATCCGC GTGCCTGATT TTGAAACGTT ACAGGAAACG CATGGCGATA GCGCTATCCT GCAGGAATAC CGTTTTACGC TCGTCAACCT GCTGTCGACG TTTGTCATGC GCTACCCCTC TGCGCTGCTG GCGCGCTATT TCAGCAGCGA TTTCACCGTA TTACTCCCCC ACAGTACGCT AAAGGAAGCT AATGCGATTG CCACGCAGTT GGTGAAAGCC ATCGATATTC TCCCTGCCTG TTCGCTTATC GATCGGGAGG AGGTTCTCCA CATTGGTATT TGCGCCTATC GCGGCGGGCA AAGTGCTGAG CAGGTTATGG AAAGCGTGGA GGATGCGACG CGTAATGCGG TATTGCAGGG GGGCAACAGT TGGTGCGTGT TTGACAGGCA GGTGCCGGAT AAAGGGCGCG GCAGCGTGAA ATGGCGGACC TTGCTGGAAC AAACGTTGGC GCGTGGCGGG CCGCGATTGT ACCAGAAGCC CGCTGTCACC AAAGAGGGCG TTGTGCATCA TCGTGAAATG ATGAGCCGGA TTTACGATGG GGAACAGGAA TTGCTCGCCG CAGAGTATAT GCCTCTGGTT CAACAGTTGG GGTTGGCGGC TAGCTATGAT CGCCAACTGG TCGCTCGAAT TGTTGATTTG TCAGCGAACT GGCCCGGAGA AACGCTGGCT CTTCCAGTAA GTGTGGACTC ACTTTTGCAA AAACCTTTCT TGCGCTGGTT GAACGAAATA TTGCTGCAAT GTCCGAAAAC ACAGCGGCAG TGCATTTTAT TTGAACTTGC AGAGGCTGAT GTTTGTCAAT ATATCGGTCG CCTGCGCCCG GTTCTTAATG TGATCCTGGA GTTAGGCTGT CGCTTGGCGG TAACGCAGGC GGGTTTGACA CTGGTCAGCA CGACGTATAT CAAGTCGCTT CCCGTGGAGG TTATCAAGCT TCATCCCGGT TTGGTGCGCA GTCTTGAACG TCGCCCGGAA AATCAGCTTT TTGTGCAAAG CTTGACCGAA GCCTGTAAAG GTACGCAAAC TCGGGTGTTT GCCGCTGGTG TGCGTACCAA AGAGGAGTGG CGGATGCTGT TGGGTAAGGG GGTTTATGGC GGGCAAGGCG ATTTTTTTGC CGCATCAATC CCTGTAACGG ATGAGCTGAA AAAATATTCA CCGCAGCATC GTGTTTAG
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Protein sequence | MGFTTRFSIL VILLTALAIF LMLFSSIFSL CYYSQSQTAQ QLREVTASID QALLVQSPEN IRYWLPGMMK TAGIVALEIQ DSDSILYAIQ LPEASWERAH LYHEVEFPLM HHLNMTIALK YVDPLIGLPR FVVSTLSVLL AASLMLLMLY FSIRWLRRQT AGQEELEKRA QRILKGERES VMQGAVHEWP VNTSGALDQL LSDLVEAREE RGRVDTLIRA FAAQDAETGL NNRLFFDNQL TTQLEDGEEV GTHGIVMMIR VPDFETLQET HGDSAILQEY RFTLVNLLST FVMRYPSALL ARYFSSDFTV LLPHSTLKEA NAIATQLVKA IDILPACSLI DREEVLHIGI CAYRGGQSAE QVMESVEDAT RNAVLQGGNS WCVFDRQVPD KGRGSVKWRT LLEQTLARGG PRLYQKPAVT KEGVVHHREM MSRIYDGEQE LLAAEYMPLV QQLGLAASYD RQLVARIVDL SANWPGETLA LPVSVDSLLQ KPFLRWLNEI LLQCPKTQRQ CILFELAEAD VCQYIGRLRP VLNVILELGC RLAVTQAGLT LVSTTYIKSL PVEVIKLHPG LVRSLERRPE NQLFVQSLTE ACKGTQTRVF AAGVRTKEEW RMLLGKGVYG GQGDFFAASI PVTDELKKYS PQHRV
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