| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Namu_4795 |
|---|
| Symbol | |
|---|
| ID | 8450425 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nakamurella multipartita DSM 44233 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013235 |
|---|
| Strand | + |
|---|
| Start bp | 5334048 |
|---|
| End bp | 5335712 |
|---|
| Gene Length | 1665 bp |
|---|
| Protein Length | 554 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 645043835 |
|---|
| Product | thiamine pyrophosphate protein TPP binding domain protein |
|---|
| Protein accession | YP_003204060 |
|---|
| Protein GI | 258654904 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG3961] Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.781269 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCAGACCT ACACCGTCGC CGACCACCTC GTCGACCGGC TGGCCGAGCT CGGCATCGAC
CGGGTTTTCG GCGTGCCCGG CGACTACAGC CTCGCCCTGC TCGACCACAT CGTGCACCAC
CCGTCGGTCG CCTGGACCGG GACGACGAAC GAGCTCAACG CCGGCTACGC CGCCGACGGG
TACGCCCGGC TGCGCGGAAT GGCCGCGCTG TGCACTACTT TCGGTGTCGG CGAGCTCAGC
GCGATCAACG CGATGGCCGG CAGCTACGCC GAACACGTGC CGGTGGTGCA CGTGGTGGGC
GCGCCCGCGC TGGTCAAGCA GGCCCAGCAC CGGCCTGTCC ACCACACCCT GGGTGACGGC
GAATTCGGCC ATTTCACCGC GATGCACGCC GACATCACCT GCGCCCGGGC CAGTCTCACC
GAGGTTAACG CGGTCGCCGA GATCGACCGG GTACTGACCG CGGTCCGCGA GCAGCGGCTG
CCCGGCTACC TGGTCGTCCC GGCCGACGTG GCCGAGGCGC CGGTGCCGCG GGCGACCGCC
CCGCTGGCCC CGAGCGCGGA CGGCACCGAT CCGGAGGCGC TGGCCGCCTT CACCGACGCC
GCCCGCGCCC TGCTCGACCG GGCCGCCACC CGGGCCGAGA TCGGCGTGCT GGCCGGCCTG
CTCGTGCACC GGTTCGGCGC GGCCGGCCCG CTGACCGACG TGCTCGCCGC CGGGGTTCCG
CACGCGGTCA CCCCGTGGGC CAAGAGCCTG GTCGACGAGT CGGCGCCGGG ATTCGCCGGC
ACCTACTCGG GCGCGGCCGG CAGCACCGAG ACGACCCGGC GGGCCGTCGA GGACGCGGCC
GCGCTGATCC TGGCCGGCGT GCAGTTCACC GACCTGAACA GCGGGCTGTT CACCCAGCGG
ATCACCCGGT CCCGCACGAT CGACCTGGGC CCCCGCGTCG CGTGCGTCGG CGCCGCCACC
TTCGCGCCGA TCGAGCTGGC CGACGCGCTG GCCGCGCTGG CCCCGCTGGT CGCGGACCGG
CCGGCCGCCG ACCTGGCCGC GGCCCCGCCG TTGGATCCGG AACCGCCGGC GCCGGACGGC
GACCCGCTCA CCCAGGCCAC CCTGTGGCAG GAGGTGGCCG ACCACCTGCG GGCCGGCGAC
ATCGTGCTGG CCGACCAGGG GACCTCGTTC TACGGCATGG CGCCGCACCC GATCCCGTCC
GGCGTCACCT TCGTCGGCCA GCCGCTCTGG GCCTCGATCG GGTACACGCT GCCCGCGCTG
GTCGGTGCGT GCACCGCGGC CCCCGGGCGG CGCGGGGTGC TGCTGGTCGG GGACGGCGCG
GCCCAGATGA CGGTGACCGA ACTGTCCACC GTGCCGCGGC TCGGGCTGCG CGCGGTCGTG
CTCGTCGTCG ACAACGACGG TTACACCGTG GAGCGGGCCA TCCACGGCCC GGACGAGCCG
TACAACGACA TCGCCCGCTG GGACTGGACC GCGCTGCCGG CGGCGTTCGG CGCGGCCGGC
GCGACGGCGG TGCGGGTCGA GACGGTCGGC GCGCTGCGGG CCGCCCTCGC CGCCGTCCCG
ACCCGCGCGG CCGGGCTCAC CCTGATCCAG GCGGTGGTGC CGCGCGACGA CGTGCCCGAC
CTGCTGGCCA CGCTGACCCG GGTGCTGGGC GGGAAGACCC GATGA
|
|---|
| Protein sequence | MQTYTVADHL VDRLAELGID RVFGVPGDYS LALLDHIVHH PSVAWTGTTN ELNAGYAADG
YARLRGMAAL CTTFGVGELS AINAMAGSYA EHVPVVHVVG APALVKQAQH RPVHHTLGDG
EFGHFTAMHA DITCARASLT EVNAVAEIDR VLTAVREQRL PGYLVVPADV AEAPVPRATA
PLAPSADGTD PEALAAFTDA ARALLDRAAT RAEIGVLAGL LVHRFGAAGP LTDVLAAGVP
HAVTPWAKSL VDESAPGFAG TYSGAAGSTE TTRRAVEDAA ALILAGVQFT DLNSGLFTQR
ITRSRTIDLG PRVACVGAAT FAPIELADAL AALAPLVADR PAADLAAAPP LDPEPPAPDG
DPLTQATLWQ EVADHLRAGD IVLADQGTSF YGMAPHPIPS GVTFVGQPLW ASIGYTLPAL
VGACTAAPGR RGVLLVGDGA AQMTVTELST VPRLGLRAVV LVVDNDGYTV ERAIHGPDEP
YNDIARWDWT ALPAAFGAAG ATAVRVETVG ALRAALAAVP TRAAGLTLIQ AVVPRDDVPD
LLATLTRVLG GKTR
|
|---|
| |