| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Namu_3610 |
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| Symbol | |
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| ID | 8449229 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nakamurella multipartita DSM 44233 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013235 |
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| Strand | - |
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| Start bp | 3964369 |
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| End bp | 3966852 |
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| Gene Length | 2484 bp |
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| Protein Length | 827 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 645042680 |
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| Product | integrase family protein |
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| Protein accession | YP_003202916 |
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| Protein GI | 258653760 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00523009 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0387105 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCGGCT CGCCGGACAC CGGCCGGGTG CAGACGTGGC GGCCCGGCCG GCCGGTCCCG
GCGGTGCAGG CGGCGCTGGC CGCCGGCGGT CTTGACCGCT TGGACCGCGA ACAGCTCGAG
CCGCTTATCC GGGCGTTGAT CTCCGAGGTC CTCCCACCGT CGCAGGTCGC CGCCGGTCGA
GGGTTAGGCG CCCGGGGAGC CCGCCGCGTG TTGGACTGGC TGGAGCAACA GGACGGCGTG
ACGTGGAGAC AGCGGTGGGA CGCCGGCGGT GGCCCCAACG GGTCCGGGTG GAATGCGTGG
CTGCAGGCGA TGAGCGGCAC GACCCGCAAC GTGTCTCGGA TGGCGATCGA CGCTCTCATT
GTCCTGCAGG CGATCCGACC AACCTCCCGG TGGATGTTGT CGATGAGCCG GGCGCGGTTG
TGGAGTCTGT GGACGACGTA TCACGACGCC GACCTGTTCG ACCGGATCCG GAACCTGCTC
GAGGCGGGCA CACCAGCGAT CCGGGTCCGG GTCGTCACGT TGATCGAGCT GTCCCGGATG
TCGATCAGCT CCGGCCGATC CCTGGCGGAG TTGCGGGCGG CTGATTTCCT GGCCGAACGG
GAGGTGCTGA TCGAGGCCGG GATGCGCGGC GCGATGTACG TGGCCTGGAC GTACGCGCGG
CGGGCCGGGC TGTTGGCAGG GGAACCGTTC GAGCTGGGTG AGGTGCTGCG AGTCCGACAG
CGGACGCCGG CGCAGCTGGT CGCCCACCAC GGGGTCGAGA ATCCCGCGGT CGCGGCGATG
TTCGTCGACT ACCTCACCGA GCGGCAGACC TCCTGCGATT ACAGCACTAT CGCGGGCCTG
GCCAGGATGT TGCTGAAGCT GTTCTGGGGC GACCTGCAGC GGCACTACCC GGGGAAGGCC
GACCTGGCGC TCACGGTCAG CGAGGCCACC CAGTGGCGGC AGCGGATCGC GACGCTGCCC
AACGGGAAAC CCCGCCGGGA CCTCGGCCAT GTGGTGAGCG CGGCCCGCGC GCTCTACCTG
GACATCGCGT CCTGGGCCCA CGACGACCCG GCACGCTGGG CGCCATGGGC GCGTCCCTGC
CCGTTCAACG GCCGCGAGAC CAGCCGGATG CAACGGCAGA ACACGCAGCG GCAAACCGCC
GCGATGGCCG CCCGCACCCG CAGCCTGACG ATGGTGGTGC CGCAACTGGT CAGCAGCATC
GCCGAGACCC TGCGAATCGC CGAGAAGCGG CTGCGGGCGG CGACCGGGAT CCCGGCCGGG
GAAGAGTTCC TACTCGACGG CCAGGCCTGG CGGGTCGCGC CGAACACGCA CACCGGCGGC
TACACCCGAA CGCAGGTGTT CGTGCTGTCC CCGGATGGCC GGCAGCTTGA TCTGACCGCC
GAGGAAGATG CCGCGTTCTG GACGTGGGCG GCGGTGGAAG TGCTACGGCA CAGCGGTATC
CGGATCGAGG AGATGCTCGA GCTCACTCAC CTGTCGATCC GGGCGTTCCG CAAACCCGAC
GGGCAGGTCG TGCCGCTGAT CCAGATCGCG CCGTCGAAGA CCAACATGGA ACGGGTCCTG
CCGGCCAGCC CGCAACTCAC CCACGCGTTG AGCCGGATCG TGGCCCGGCA GCTGGCGCAC
CAACAGGCTG CGCCGGTCGA CGACCGCGGG CCGATGCTGC CCCTGGTCTC CCGACGGGAC
GAGTACGAAC TCACCTACAG CACACCGTTG CCGTTCCTGT TCCAACGCCG ACTGGGCAGC
GGCCGCCGCA CCGTGATGAG CGGGGCGTTC GTCCGCAACC GACTCGACAA GGCCGCCGTC
GCCGCGGGAC TGCGCGACAC CGACGGCGCC CCGATCCGGT TCACCCCGCA CGATTTCCGG
CGCCTGTTCC TCACCGACGC CGTGACCAAC GGGCTGCCCA TCCACATCGC CGCCCAACTG
GCCGGTCACG ACGACATCAA CACCACCCGC GGCTACGTCG CGACCTACCC GACGGAGGTG
TTCGCCGCCT ACGACTCCTA CCTCGCCCGG CGCCGCGCGC AACGCCCCGC CGACGAATAC
CGCTCTACAA CACCGGAGGA ACTGCAGGAG TTCGCCGAAC ACTTCGGCCG GCGCCGGGTC
GAGCTCGGCA ACTGCGCCCG CCCCTACGGC ACCGGATGCA GCCACGAACA CGCCTGCATC
CGCTGCGACT ACCTGCACGT CAGCGCCGAC CAGGCCGGCC GCCTGGACGC CATCGAACAG
GACCTGCACA AACGAGTCGA CCGAGCACAG CAGCAACAGT GGTTCGGCGA CCTCGACCAG
CTCCGGGTCA CTTTGGAACA TCTCAAGGCC AAGAAGGAAC AGGTGGCGCT GTCCCCAGGC
AGCGACGGCT TGCCGATCGA CTTGCTGCTC ACCGCACCAC CGATGACGAT CCCAACCGGA
CAACCAGGGG TTGCCGTAGC TTCTCGACGA GGATCGGGCG GATGTGCCGG ACCGGCAGTG
CTCAATCATC ACGGCGTCGC CTGA
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| Protein sequence | MTGSPDTGRV QTWRPGRPVP AVQAALAAGG LDRLDREQLE PLIRALISEV LPPSQVAAGR
GLGARGARRV LDWLEQQDGV TWRQRWDAGG GPNGSGWNAW LQAMSGTTRN VSRMAIDALI
VLQAIRPTSR WMLSMSRARL WSLWTTYHDA DLFDRIRNLL EAGTPAIRVR VVTLIELSRM
SISSGRSLAE LRAADFLAER EVLIEAGMRG AMYVAWTYAR RAGLLAGEPF ELGEVLRVRQ
RTPAQLVAHH GVENPAVAAM FVDYLTERQT SCDYSTIAGL ARMLLKLFWG DLQRHYPGKA
DLALTVSEAT QWRQRIATLP NGKPRRDLGH VVSAARALYL DIASWAHDDP ARWAPWARPC
PFNGRETSRM QRQNTQRQTA AMAARTRSLT MVVPQLVSSI AETLRIAEKR LRAATGIPAG
EEFLLDGQAW RVAPNTHTGG YTRTQVFVLS PDGRQLDLTA EEDAAFWTWA AVEVLRHSGI
RIEEMLELTH LSIRAFRKPD GQVVPLIQIA PSKTNMERVL PASPQLTHAL SRIVARQLAH
QQAAPVDDRG PMLPLVSRRD EYELTYSTPL PFLFQRRLGS GRRTVMSGAF VRNRLDKAAV
AAGLRDTDGA PIRFTPHDFR RLFLTDAVTN GLPIHIAAQL AGHDDINTTR GYVATYPTEV
FAAYDSYLAR RRAQRPADEY RSTTPEELQE FAEHFGRRRV ELGNCARPYG TGCSHEHACI
RCDYLHVSAD QAGRLDAIEQ DLHKRVDRAQ QQQWFGDLDQ LRVTLEHLKA KKEQVALSPG
SDGLPIDLLL TAPPMTIPTG QPGVAVASRR GSGGCAGPAV LNHHGVA
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