| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2349 |
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| Symbol | |
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| ID | 8420209 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 2678808 |
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| End bp | 2681639 |
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| Gene Length | 2832 bp |
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| Protein Length | 943 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 645038951 |
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| Product | PDZ/DHR/GLGF domain protein |
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| Protein accession | YP_003199210 |
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| Protein GI | 258406468 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTGCGG GTATATTTGG ATTCTGGGGT CTGGTCCTGG TTGCGGGGAT GCTGCTTTTT
ACAGCCGCAG GGTGCAAAAC CAGCGGGCCG GCAGCGCTCG GATCTTCGGC GGCAGATGCT
TCGCCCTCGG TCGCCAGTGG TCCGTCCCTC TCCCAAACGC TTGCTTCGGG GTGGGACCAT
CTTCTCGATG AATCCTTTAC AGACAACGCC CGCTCCTGGC CGGAGCAGGA TACTGATCGT
GTCCAAAGCA GGGTCGCCGG AGGGGTGTAC ACCGTGCAAT TGGATGACCG TCTTGCCCAT
CTGCAAGCGT TGACCGATGT TCGGCTCAAC GGACTTGCCG ATTTCAGGGT TGCGGCGACG
TTCAATTACA AAAGCAGGGA CAAGAGTTAT GTCGGGCTCC TCTTCGGTGC CGCGGATGTG
CGGCATATGT TCCGTTTCCG TCTGGAGGCC AGCGGGCGGG TGTCACTGAG CCGTGTGGCG
GCGGGCGAGT ATACAACACT GGTGAAAAAA CAGGTCCCGG ACCTCCTGAA CGCCCCGGGA
GGCGAGTACC ATCTGGCGGT GGTCCAGGAA GGCGACACTT GGCGGTGTGA AGTTAATGGG
CGCGAAGTAT TCCGTCTCCC GGCCGAACCA GTTTATGGAG GCCGTGTCGG ACTGTATGCC
TACGGCAAGC AGCGGTTGCG GGTTCACCGT CTGCAGGTGG CACGGGATGG CACGGGCCTG
CAGGCAGTGC GGACCTGGAC CGGGCTGGGC GATCGCTTCG GATTCGAGCA ATACGCGTTC
AGTGAAGACG GCCGGCGTTT GGCCACGTGG TCTGCTGTCG GCCCCCGGGG GCTGCTCGCC
TTGTGGGATG TGACCAGTGT GGCCCGCCCT CTGGTGGGCT GGCGATTCGT GGACCATCCG
GTGCGGCGAC GCAAAGGCGC GGAACCGGTC CATTTTTTCA ACACCAATGG GCAAAAGCGC
TTCGCGGTCT CGGATGACGG CACCCTCGGA GCGGTGACTT TCTGGTTTGA AGGCGACACC
TCCCGCTTGG TGCTGCAGGT CTTTCGCTGG GATGATCCCG CCACGCCCGT ATTCCATATC
CAAAAACGAG CCCCCGGCCG GGTGGTTCTG CCCCATGGCG TGGCCCTGCG GCCGGACAAC
GACATGGTCG CCTTGAACAC CGCGGTCCAG GGCACCCAGG GGCAGGTCTT TGCCAGCGGA
GAGGTGGTTT TTTTCCCTCT GTATGACGGC GGCACGCCCT CCAAATTCAC ACCGCCGGCC
GATGGGGCTG TTTTTATGCA GCATCCGCGC TGGAGCGCCG GGGAAGGGTT TTTCGCCGAG
GTGCTCTACC GGCCCCAGGG GAAGGCGGGT GAGATGTACT GGGTCGTCTA TCCCTTTGGC
GGCGGGGGCG ATACCGGTCC GCAGGCCTTG CGGGCCAAGG GCGAGACCAC AATCGCTTAT
CGCCGCGCCC GGAGTCTGGA TGTCACCGCG GATGAGCGTC TGCTGAGCGT ATTGGAGCAA
GAGGGGGGCG TGCGCTGGTA TCGCACCCAT GATCTCACCA CGCCCTGGGT GCGTGTGGAC
CTGGACGACC AGGCCTATCT GGGCGTTTTC GGCGGCCGGG ACGAATGGGG GATGCTCACC
ACCAGTCTGT ATTTTCAGCG CTTTGCGATC CAGGACGACC GTGTCGTGCC CCTGGGGCGT
GAATGGTGTC CGTTTCTGGC CCAGGATATG ATTTATTCTC CGGACCGTGG AGGATGGCTC
GTCGCCGGGG CGAAGCAGGT ACGATTGTAT CCCGATTACG CTCAGGCGGA GCATGATGCC
GCCCTGGCTC TGCATGAAGC CGAGGAATTA CTCCAGGTGG GATTTGCTGA ACAAGCCGAG
GCCAAGCTGC AACAGGCCTT GGACCTGGAT TACACCTTCC AGGCCAAGGA TACTGAAGAG
CTGTATCTGA CCCTGTTGCC GCGGATGGCG GCCAGCGCCC GGGCCCGGCT GCCGGGACGA
CTGGCCCTGG AGCAATACCA GCGCGGCAGA CAGGCGCCGA AAATCCCGGT GCTGGGCCTG
CAGGTCCGAA GCCAGGATGG TGGAGTCGTG GTCCAGAACA TCCATGACGG CACTCCAGCT
GTCGCTTCCG GCCTGCGGAC CGGGGACCAC ATCCTGCGTT TCCAGGATCG GGCGGAGACG
GATGTGGCGA GCTTGGTGGA AGCGGTACGG GCCTGCACTC CGGGCCAGCG GGTCAATCTT
CAGGTCCGTC GCGGGGATAC GCTACAGACG GTCTCCCTGG ACACCCTGGC CCGCTGGAAG
GAGGACGCGG CTCTGGAGGC CACGGTGTAC GGGTTGTTCA ATTATGGGCT GTTTGCCGCC
GAAGCGGGGC AACCGGCCCT GGTCAGTGCT GCGGCCGACG CATTCGACTC CCTGCTCCGG
ACACACCCCG GGGCCGTCAA ACCTGAAAAG CTCAACGGCT TTGCCGCGAT ACTGCGCGCG
CTCGCTCTGG CCGGGCAGGG GCAGCGTGAT GAGGCGCTGG CAGCCTTACT CGGGGTCTCT
CTGGATGCGC AGCAGCACAA GTATATCCTC AAGCGCACGG CGGCTTTTGC TCCATTGTAC
GGGGAACGGG ACAAGCTGGC GTATGTGCTG GATGTCGATG CCAACGAGAT TCCGCAGACT
ATAGCGCAAG CTGCCAAGCC CCAGCCGTAC CCGGATTTGC AGGGACGGCT GGTTCGACCG
CCCTCCGCAC CGGAATTGCA GGCACCGCTC CACACCCCGG CAACAAGCGG CAGTTCAGCG
ACTCCGGATA CCCCAGTAAC GCAACCGCAA TCCGGTCCGT CCTCTTCAGG CGGGGCCGTG
ATTTTGGAAT AG
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| Protein sequence | MRAGIFGFWG LVLVAGMLLF TAAGCKTSGP AALGSSAADA SPSVASGPSL SQTLASGWDH
LLDESFTDNA RSWPEQDTDR VQSRVAGGVY TVQLDDRLAH LQALTDVRLN GLADFRVAAT
FNYKSRDKSY VGLLFGAADV RHMFRFRLEA SGRVSLSRVA AGEYTTLVKK QVPDLLNAPG
GEYHLAVVQE GDTWRCEVNG REVFRLPAEP VYGGRVGLYA YGKQRLRVHR LQVARDGTGL
QAVRTWTGLG DRFGFEQYAF SEDGRRLATW SAVGPRGLLA LWDVTSVARP LVGWRFVDHP
VRRRKGAEPV HFFNTNGQKR FAVSDDGTLG AVTFWFEGDT SRLVLQVFRW DDPATPVFHI
QKRAPGRVVL PHGVALRPDN DMVALNTAVQ GTQGQVFASG EVVFFPLYDG GTPSKFTPPA
DGAVFMQHPR WSAGEGFFAE VLYRPQGKAG EMYWVVYPFG GGGDTGPQAL RAKGETTIAY
RRARSLDVTA DERLLSVLEQ EGGVRWYRTH DLTTPWVRVD LDDQAYLGVF GGRDEWGMLT
TSLYFQRFAI QDDRVVPLGR EWCPFLAQDM IYSPDRGGWL VAGAKQVRLY PDYAQAEHDA
ALALHEAEEL LQVGFAEQAE AKLQQALDLD YTFQAKDTEE LYLTLLPRMA ASARARLPGR
LALEQYQRGR QAPKIPVLGL QVRSQDGGVV VQNIHDGTPA VASGLRTGDH ILRFQDRAET
DVASLVEAVR ACTPGQRVNL QVRRGDTLQT VSLDTLARWK EDAALEATVY GLFNYGLFAA
EAGQPALVSA AADAFDSLLR THPGAVKPEK LNGFAAILRA LALAGQGQRD EALAALLGVS
LDAQQHKYIL KRTAAFAPLY GERDKLAYVL DVDANEIPQT IAQAAKPQPY PDLQGRLVRP
PSAPELQAPL HTPATSGSSA TPDTPVTQPQ SGPSSSGGAV ILE
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