| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2278 |
|---|
| Symbol | |
|---|
| ID | 8420136 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 2587716 |
|---|
| End bp | 2589515 |
|---|
| Gene Length | 1800 bp |
|---|
| Protein Length | 599 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 645038879 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_003199140 |
|---|
| Protein GI | 258406398 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAAC ACACCCCGAT CTGGCAACGC CGCCGCCTGA CCTATTGCCT GGACATCCTG
TTGCCATTGT TGCGCGAAGC CGGGGAAATC GTCCAGGAGC AGGAGGCCCG GGTCCGCCGC
CACGCCGAGG ACAAACATAT TTCCGGCAAG GATCCCGCCG GGTTCGATCT GCTTTTGGAA
CTCGGTTTAC AACGGCACGT CTTGCCCGAA TCCGGTCCAA GCACGGTCAC AGAAGAAGTG
GTGCTCCAGA CAGTGGGGAA CTGTTTCGGC CTCAGCCTGA TCCGGGTCGA CTATCTCGAC
CTCGACCTTG AGGTCAGCAC GAAAACGATC TCTGAGAGCT TCGCCCGCAG TCACCAGATC
GTGCCTCTGC GCATCGAAGA CGGCCGTCTC ACCCTTTTGG CCTTCAACCC CTTTCAACCC
GATCTCTGGG CTGACATGCA GCGGGTCACC GGCCTGCCCT ACACCGTCTA TCTTGGCACC
CGCGCGGATA TCCACCGCCT GATCGACGAT TTCTTTCGTT TTCGGCTGGC CATCCAGGCC
GCGTCCGAAG AATTCGGCGA CGGCCTCGAT ATTTCTAATC TTGAAGGGCG GGTCGATGTC
GGCAGCAAGG GCCCCCCAGG CCAGCGCAGC CATAAACACA TTATCCAGGC CGTGGACTAC
CTCTTGCAAT CGGCCCTGCG CGAGCGGGCC AGCGATATCC ACCTGGAGCC CAAACGGGAC
CACTCCCTGG TCCGATTCCG CATCGACGGT GTCCTGCACC CGTTGTACCG CTTGCCGCTG
ACCGTTCACC GGGCCATGGT CAGCCGGATC AAAGGGCTGA GCCGCCTGGA CATCTCCGAA
AAACGGCGCC CCCAGGACGG GCGGGTCCAA TTGGTCCTGG AGCACAAGCC GACTGATGTC
CGGGTCTCCA CCCTGCCGGT GGCGTTCGGC GAAAAAATGG TCCTGCGTCT TTTGTCCAGT
CACGCCGATC TGCCGGCACC TGATCAGTTG GGGATGGACG CAGACCAGTT TAGCCTCTTT
GAACGTTTTC TCGCCCGGAC CCACGGATTG CTCCTGGTGA CCGGGCCAAC CGGCAGCGGC
AAATCGACCA CCTTGTATTC TGCGCTCCAC AGCCTGAGTT CGCCGCTGGT CAATGTGGTC
ACCGTAGAAG ATCCCATAGA AATGGTCATG GACGATTTCA ATCAGATTGG CCTGCAACCG
CAGATCGGTT TTGGATTTGC CGCCACGTTG CGCCACATCC TCCGCCAGGA TCCGGACCTG
ATCATGGTCG GGGAAATGCG GGATCTGGAG ACCGCGGAAC AGGCCGTGCA AGCTGCACTC
ACCGGCCACC TCGTCTTCTC CACCCTGCAC ACCAATGACG CCGCCTCGAG CCTGACCCGA
CTTGTCGATC TCGGACTCCC CGAATACCTT ATCAATGCCG CTTTGGTGGG TATCATTGCC
CAACGCCTTG TGCGTCGCAT TTGCCCGTAT TGCAAACGCG AACACCGTCT CTCCTCGCAG
ACCCTGCAGC ATTGGGGACT TTCCCAGTGG GCGAATGACC CGCCCCGGCT CTGGGAAGGC
AAAGGATGCG ACGCCTGCCG TTTTACTGGG TACCTGGGAC GGATCGGGAT CTTTGAGATC
CTCCCCTTTA CCGCTTCGTT GCAGGAGGCT ATGCGGACGG GAGCGGATGT GGAAGACCTG
CGCGGCATAG TCCAACGCGA GGGATTGACG ACCCTTCTCG ATTCAGGATT ACAACGCGCC
TTGAAGGGAG AAACCACGGT CCAGGAAGTG CTTCGGGTCA CCGGGACCCG CACTGTCTAA
|
|---|
| Protein sequence | MSQHTPIWQR RRLTYCLDIL LPLLREAGEI VQEQEARVRR HAEDKHISGK DPAGFDLLLE
LGLQRHVLPE SGPSTVTEEV VLQTVGNCFG LSLIRVDYLD LDLEVSTKTI SESFARSHQI
VPLRIEDGRL TLLAFNPFQP DLWADMQRVT GLPYTVYLGT RADIHRLIDD FFRFRLAIQA
ASEEFGDGLD ISNLEGRVDV GSKGPPGQRS HKHIIQAVDY LLQSALRERA SDIHLEPKRD
HSLVRFRIDG VLHPLYRLPL TVHRAMVSRI KGLSRLDISE KRRPQDGRVQ LVLEHKPTDV
RVSTLPVAFG EKMVLRLLSS HADLPAPDQL GMDADQFSLF ERFLARTHGL LLVTGPTGSG
KSTTLYSALH SLSSPLVNVV TVEDPIEMVM DDFNQIGLQP QIGFGFAATL RHILRQDPDL
IMVGEMRDLE TAEQAVQAAL TGHLVFSTLH TNDAASSLTR LVDLGLPEYL INAALVGIIA
QRLVRRICPY CKREHRLSSQ TLQHWGLSQW ANDPPRLWEG KGCDACRFTG YLGRIGIFEI
LPFTASLQEA MRTGADVEDL RGIVQREGLT TLLDSGLQRA LKGETTVQEV LRVTGTRTV
|
|---|
| |