| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2137 |
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| Symbol | trmE |
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| ID | 8419987 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 2436109 |
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| End bp | 2437494 |
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| Gene Length | 1386 bp |
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| Protein Length | 461 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 645038730 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_003198999 |
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| Protein GI | 258406257 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.075642 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAACAGG GGCAGTCGAC AGAGACCATC GGGGCTATCG CCACGCCGCT GGGAAGCGGA
GGGGTGGGAA TCGTCCGCCT CAGCGGCCCG AAAAGCCTGA CCGTCGCCCA GCGGTTATTT
CTCTCGGCCA GGCAAACGTT CGAGGCATTC AAGCCCTACC GGCTCCACCA CGGCTGGGTG
ACTGACGTCC ACGGTGCTCG TTTGGATGAG GTCCTGGTCA GTTTTATGCC CGGCCCAGGG
TCCTACAGCG GGGAGGATAT AGTGGAGATC AACTGCCACG GTGGTCCGGC CGTGGTCCAG
GCCGTGCTCG AGGCCGTCCT GGAATGCGGC GTCCGTTTGG CGCGGCCGGG GGAATTCACC
CTGCGGGCGT ATCTCAATGG CCGTCTGGAT CTGACCCAGG CCGAGGCGGT GGCGGAAATG
ATCAATGCCC CGACAGCCAG CAGTCTGCGT TTGGCCGGGA GCAAACTGGC CGGGGGATTG
GGACGCTATA TCCGCGACCT GCGTCAGCGG TTGGAGAGCC TGCGGGTCCA GATGTGCGTG
GCCGTGGATT TTCCGGAAGA GGAGATCGAG TGCTTGGCGC CGGAAGAGCT CCAAGCAGGG
TTGGAACAGG TCCTGGTGGA TATTGAGGCT ATCATGGCCA ATTTCGAGCG GGACCGGTAT
TGGCGCGACG GCGCCCTGGT GGTGCTGGCT GGCCGGGTCA ATGCCGGCAA GTCCAGTCTC
ATGAATGCGA TTTTGGGACG GGAGCGGGCC ATTGTGACCC CGATCGCCGG CACAACCCGG
GATTATCTCG AAGAGCAGGT CAATCTGTCC GGGCTACCCG TGCGCCTTGT GGATACGGCG
GGATTGCGCG AGACCGATGA TCTGGTCGAG CGGGCGGGCT TGTCGCGGTC ACGGGAATTG
CTGGAGCAGG CCGATCTGGT CTGTGTTGTG CTGGACAGCA GTCAGGCGTT GACCGCGGAC
GACCGCGCCC TGCTCCAGGA GGCTCCGAAC GAGACGACAT TGGTCGTTTT GAATAAACAG
GACCTGCCGC CCCACACAGA GACCCAGGAG GCGGTCGCTG CACAAGGGCT GCCGACGGTA
CCGGCCGTGG CCGTGGAGGC CGACGGTGTC GACGCCTTGA TCCGAGCGGT ACGCCAACGG
CTGGTGGGTG AGCGCCAGGA GCCGGAGCAG GGGGAACTGG TCCCCAATCT CCGCCAATCC
CAGGGGCTGG CTCAGGCCCG AGAGGAATTG CGGGCGCTGT ATGACGAATG TCGAAACGGG
GTGCCGTACG ATCTCTTGAG TGTCCGCTTG GAAACCGCTT GCACAATCCT CTCGGAGATC
ATCGGGGAGA TGACCCCCGC GGCCGTCCTG GAACAGGTCT TCGGCGAGTT CTGTATCGGG
AAGTAG
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| Protein sequence | MEQGQSTETI GAIATPLGSG GVGIVRLSGP KSLTVAQRLF LSARQTFEAF KPYRLHHGWV
TDVHGARLDE VLVSFMPGPG SYSGEDIVEI NCHGGPAVVQ AVLEAVLECG VRLARPGEFT
LRAYLNGRLD LTQAEAVAEM INAPTASSLR LAGSKLAGGL GRYIRDLRQR LESLRVQMCV
AVDFPEEEIE CLAPEELQAG LEQVLVDIEA IMANFERDRY WRDGALVVLA GRVNAGKSSL
MNAILGRERA IVTPIAGTTR DYLEEQVNLS GLPVRLVDTA GLRETDDLVE RAGLSRSREL
LEQADLVCVV LDSSQALTAD DRALLQEAPN ETTLVVLNKQ DLPPHTETQE AVAAQGLPTV
PAVAVEADGV DALIRAVRQR LVGERQEPEQ GELVPNLRQS QGLAQAREEL RALYDECRNG
VPYDLLSVRL ETACTILSEI IGEMTPAAVL EQVFGEFCIG K
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