| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2136 |
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| Symbol | |
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| ID | 8419986 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 2433784 |
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| End bp | 2435928 |
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| Gene Length | 2145 bp |
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| Protein Length | 714 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 645038729 |
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| Product | ribonuclease R |
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| Protein accession | YP_003198998 |
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| Protein GI | 258406256 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.101446 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.136172 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAAGC GGAAAAAAAA GCAGAATACC AGCGGTCGCA TCCAGGCCAG AGACCTGTTG
CGGCTTTTTC GTGAACAGGG CCGCCCCCTG TCACGCCGGG AGATCTACGA GCAGCTCAAA
CCCGGCGCCA AAGACAAAAA GATCATCCGT TCACTGCTGG ACTCCCTGGT GGACAGCGGC
AAGCTGATCA AGATCGGCAA AGGGTATGGG CTGGTAGAGA AGATGCCGCT CACGCCCGGA
CGTCTTGAGG TCCAGCGCTC CGGTGTCGGC TTCGTCATTC CCGACGACAA ACGGCTCAAA
GATATCTTTG TCGCTCCGGA CAATTTCGGG GACGCCTGGC ACGGCGACCG GGTCATGGTC
GCCAAGACGC CCGGCAAACG GGGGCGGAAC CCCGAGGGCC GCATCGCCCG GCTCCTGGAA
CGGGGGTGTT CGAAACTGCC GATCCGGGTC ACCCGGTTGC TGGGCGACGA GGCCGTGCTG
GGCCGGCCGA CCTCGACCCG CCACAATTTC AGCCTCATGG TCGATATCAC CGGACTCGAG
GAGCGCCCCA AGACCCGAGA CATCCTCCTG GTCGCCCCGG GCGAAAAAAT CGAACCCTAC
CTTTGGGGCG GTGAAGCCCT GGAATATCTG GGCGCCGAAG AGGAGGCCCA TGTCCAGGAG
GATCTGGTCA AAGCGTCGCA CTCTGTGCCC ACCGTCTTTC CTGAGCGGGC CTTGCATGAT
GCGCAACAGC TCCCGGACGA ACCCGACCCC GAGGAAGTAG CTCGCCGGGC CGATCTGCGC
CACCTCCCCT TTGTGACCAT CGACGGGGCC AAAGCCAAGG ATTTCGACGA CGCCATCCAT
GTCGCGCCCA CGGACAGCGG CTACACCCTG CATGTGGCCA TCGCCGACGT CAGCCACTAC
GTCCATCCCG GCAGCGCTCT GGACAAGGAG GCCCAGCAAC GGGGCAATTC CTATTACTTC
CCCCAGTCCG TGGAACCCAT GCTCCCGGAA AAGCTCTCCA ACGGGCTCTG CAGTCTGCGA
CCCAACGTCG ACCGCTTGGT CATGGTCGCG GAAATGGATT TCACCCGGCA GGGCAAGCGG
ACAGGATCGC GGTTTTACCC GGCCGTGCTC CAAAGCGCTT TCCGCTTGAC CTACGCCCAG
GTCAAGCAGG CCGTCCTGGA CCGTGACTCC GCCGCGCGCG ACCCGCTGAC CCCGGTCCTG
CCCATGCTTG AAAACGCCGA GGCCCTGGCC CGGAGTCTTT TGGCCATGCG CCAGCGCCGC
GGGACCATGA ATTTCGATCT CCCGGAACCG GAAATCCACT TCAATCTCCA GGACGAGGCC
GTGGACATCC GGCCCCGGGT CCGCCATTTC GGGCACCAGA TCATCGAAGA ATGCATGATC
GCGGCCAACG AGGCCGTCGC CGAATTCCTG CGCGACCGCG AGGAGCCCTG CATGTACCGG
GTCCACCCGC CACCGGACAG CGACAAGTTG GAGACCCTCT TTCGCCTCCT GGCCCAGACC
GATCTGGCGG AATCCCTGCC CCAGGACACC AGCCCCAAGG ACTTGCAAGA ATTGTTGACC
CGGGTGGAGG GCACCAAACT CGAATTCCTG GTCAACCGTC TTCTGCTCCG AACCATGATG
CAGGCCTATT ACAGCCCCAA AAACGACGGC CACTTTGGAT TGGCTTCAGA GTGCTACTGC
CATTTCACCT CGCCCATCCG CCGCTACGCC GACCTGGTCG TGCACCGCTA TCTCAAACGA
ACGCTTGCCG GCGAGGATCC GGGCAAGACG AATATCAAAC GACTGACCAA GGTTGCCGAC
CACATCAGTC AGCAGGAACG TCGGGCCATG GAAGCCGAAC GGGAAATCCT GAAGCGGCTG
ACCATCCTCT TCCTGCGCGA CCACGTCGGG CGCACCTTTA CCGGGGTCAT CGCCTCCCTG
GCCGATTTCG GGTTCTGGGT CGAACTCGAC GAGGTCCTGG CCGAAGGCAT GGTCCGGCTC
TCGACCCTCA ACGACGACTA CTACGTTTTC TGGCCGGAAA AACAGCAGAT CATCGGCGAA
CGCACCGGGC AGACCTTCCG TTTAGGGCAG GAAGTCCGGG TGACCTTGAC CGACGTCAAC
CTGGACCGTC TGGAGGTCAA CCTGGCCTTG GAAGAAAAAT CCTGA
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| Protein sequence | MAKRKKKQNT SGRIQARDLL RLFREQGRPL SRREIYEQLK PGAKDKKIIR SLLDSLVDSG
KLIKIGKGYG LVEKMPLTPG RLEVQRSGVG FVIPDDKRLK DIFVAPDNFG DAWHGDRVMV
AKTPGKRGRN PEGRIARLLE RGCSKLPIRV TRLLGDEAVL GRPTSTRHNF SLMVDITGLE
ERPKTRDILL VAPGEKIEPY LWGGEALEYL GAEEEAHVQE DLVKASHSVP TVFPERALHD
AQQLPDEPDP EEVARRADLR HLPFVTIDGA KAKDFDDAIH VAPTDSGYTL HVAIADVSHY
VHPGSALDKE AQQRGNSYYF PQSVEPMLPE KLSNGLCSLR PNVDRLVMVA EMDFTRQGKR
TGSRFYPAVL QSAFRLTYAQ VKQAVLDRDS AARDPLTPVL PMLENAEALA RSLLAMRQRR
GTMNFDLPEP EIHFNLQDEA VDIRPRVRHF GHQIIEECMI AANEAVAEFL RDREEPCMYR
VHPPPDSDKL ETLFRLLAQT DLAESLPQDT SPKDLQELLT RVEGTKLEFL VNRLLLRTMM
QAYYSPKNDG HFGLASECYC HFTSPIRRYA DLVVHRYLKR TLAGEDPGKT NIKRLTKVAD
HISQQERRAM EAEREILKRL TILFLRDHVG RTFTGVIASL ADFGFWVELD EVLAEGMVRL
STLNDDYYVF WPEKQQIIGE RTGQTFRLGQ EVRVTLTDVN LDRLEVNLAL EEKS
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