| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2030 |
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| Symbol | |
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| ID | 8419875 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 2328546 |
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| End bp | 2330342 |
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| Gene Length | 1797 bp |
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| Protein Length | 598 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 645038618 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_003198892 |
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| Protein GI | 258406150 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0310843 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00101821 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTACCC TGCGCTACGT TCTTGAAAAA TCCTGGGCCC AATATCTTGT CCTCTTTCTC
CTGGTCGGCA CGGCCATATA CTATTGGGGC TGGATTTTCG ACTTCGGGTA TGAGTTCGAT
TGGTCTGTTC TCTTCACCTT CAATGATACC TACGGCGAAT ACCTTGGGTT GAACCTGCTG
AAGGGATTGA AGGTCACAAT CATCATCTCG TTGATAAGCG CGGGGATTGC TCTAGGATTG
GGGACTGTCT TCGGGCTCGG GCGCCTGTCG TCCTTCAAAC CCTTCTATCT GTTTTCGACC
TGGTACGTCG AATTCTTCCG GAACACGCCC CTTCTGGTCC AGCTCTTCTT CTGGTATTTC
GCACTGCCCA AAGCCCTCCC GGAAGCCGCT CGCAATTTTG TCTTCAGCCT CGATTACGAA
TTCTGGTCTG CAACACTGGG CTTGGCGATT TACACCAGTT CCTTTATGGC CGAAGTCATT
CGCGCCGGCG TCCAGTCGAT CCCCAAAGGC CTTCTGGAAG CGGCGTACTC CTCGGGACTG
ACCTATTTCC AGGCCTTGCG CACGGTGATC CTGCCCCTGG CCTTCCGGGC CATCATCCCC
CCCTTGGGCA GTGAATTTTT AAACAATATG AAAAATTCCT CCCTGGCCAT GGTCGTCGGC
GTAGCTGAAC TCACATGGCA GTCCCAGCAA ATCGAATCCC TGACATTCCG AGGCTTTGAA
GCCACGACTG GCGCGACTGT CCTGTATCTC GGGCTGTCCC TGGCGATCTC GGGGCTGTTG
AACATGATCA ACACCCGGTT GCGCATTGAA GATGTCCATA AAAAGGGAGG ACTGACCTAC
CACTTGACCG GCGCGCTCTT CTGGCCCTTC ACGCAGATCT GGAAACTCGG CATTCTTCCC
GTCTGCAAAT TGTGCGCTCC GCCGGCAGAC AGTCTGCGAA TGTCCCCCGG CAGACGAATG
TGGGAGACGG CGAAAAAATC CCTTTTCCAG GCAATGGCCT GGCTGGCCAA AGGGGGATTC
GTCCTGGTCT TTCTCTATAT CCTCTACAAG ATCGGTCAGG GGTTGATGTC ATTTCATTGG
GACGTGGTCT GGGAAAATCT CGACACCCTG CTTATCTGGC GTTTTCCCCA AAGCGGCGGG
GGAGAAGAGA ATTTTATGTG GGGTCTTGGC GGACTGAGTT TCTCCATTTT AATGGCGGTG
ATAGCCATAT CCATCAGCTT TTTCATCGGC CTTATTGTCG GGCTTGGCCG GATGTCCAAA
AACCGTATCC TGCGCCTGCC CTGTATGGTC TATATAGAGG TTATCCGGGG CAACCCGCTT
ATCATCGTCA TTTTCTGGGT CTATTTCTTT CTGCCCATTT TCATTAAAAC CTATCTCAAT
GTCTTCTGGA GCGCGACCAT CGCCCTGACC ATCTTTACCG GGGCCTATAT CGCTGAAATC
GTCAGGGGGG GGATCCAGAA CATTCCTCCG GGGCAGTTTG AGGCCGCCTA CGGGACCGGG
TTGGGATATT GGAGCACCAT GCGCCATATC GTCCTGCCCC AGGCCCTGAA ACAAATGATC
CCGGCTATTG TCGGCCAATT CATCGCCATC TTCAAAGACA CCTCGCTGGC ATTTGTGATA
GGGGTCCTGG AACTCACCTT TGTCGCACAG GGCCTGAACA ATCGGTTGAT GATTTATCCT
TTCGAGATCT ATACTTCTGT TGCGGCGCTT TATTTCATTT GCTGCTATTC TATGAGCCTT
ATGGCCCGGC GACTGGAAAA TAAACTCACT CCGGCATCAG CCCGGATGCA GATGTAA
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| Protein sequence | MSTLRYVLEK SWAQYLVLFL LVGTAIYYWG WIFDFGYEFD WSVLFTFNDT YGEYLGLNLL
KGLKVTIIIS LISAGIALGL GTVFGLGRLS SFKPFYLFST WYVEFFRNTP LLVQLFFWYF
ALPKALPEAA RNFVFSLDYE FWSATLGLAI YTSSFMAEVI RAGVQSIPKG LLEAAYSSGL
TYFQALRTVI LPLAFRAIIP PLGSEFLNNM KNSSLAMVVG VAELTWQSQQ IESLTFRGFE
ATTGATVLYL GLSLAISGLL NMINTRLRIE DVHKKGGLTY HLTGALFWPF TQIWKLGILP
VCKLCAPPAD SLRMSPGRRM WETAKKSLFQ AMAWLAKGGF VLVFLYILYK IGQGLMSFHW
DVVWENLDTL LIWRFPQSGG GEENFMWGLG GLSFSILMAV IAISISFFIG LIVGLGRMSK
NRILRLPCMV YIEVIRGNPL IIVIFWVYFF LPIFIKTYLN VFWSATIALT IFTGAYIAEI
VRGGIQNIPP GQFEAAYGTG LGYWSTMRHI VLPQALKQMI PAIVGQFIAI FKDTSLAFVI
GVLELTFVAQ GLNNRLMIYP FEIYTSVAAL YFICCYSMSL MARRLENKLT PASARMQM
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