| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1994 |
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| Symbol | |
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| ID | 8419839 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 2290231 |
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| End bp | 2291730 |
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| Gene Length | 1500 bp |
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| Protein Length | 499 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 645038582 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_003198856 |
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| Protein GI | 258406114 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCAGGT CAACCACAAT ATGCATTGCA ATATTCACAA TTCTGCTTTT GTCCGGATGC
GCTACCACCG ATCAGGAAAA GGCACCTGAA TTTATAGATA AGTGGCAGAA ACTGGCGGAA
AAATCCAAAG GCCATTCGCC TGTACCCCAA GAAGCGAATA CTCATGAGCC TGATACCTTT
ACCAGTTTAG AGCGTCATCA ACAAGAAAAA CACAAATTGC CTCGGGAGAA AGTCTCTTTA
AAATTTCGTG ATAACAAAAT ACAAGTTATT TTACGTACTC TAGCATCGGC AGCTAGCCAA
AATATTGTCA TGAGCAATAA TATTAGTGGC ACCATGAGCT TAGATGTCAA AGATATTCCT
TGGAGCCAAG CGTTCTTGAG TGTTATTACC ACCAACGGCC TGACTTATTC CTGGCAGGGA
GATATAATTC AAGTTCAAAG CCCAAAAGAT ATGCAAATGG AGAAAGAACT CCAGCAAATC
CAAAAGGAAA CCCAGATCCT GCAAACGACT GTTGTCGATA TTGACTATGC CCACATTGTA
GACAAAGGCG TAAAGAGCGG AAATACCAAT GACAACGGCA ATCTGGATCA ACTGGAAAAG
ACCTTGCGGG AAGTTCTAAA AAATGCAAGT GGAGGAAGCA AGGAAGGGAC GTTGTTTGTG
GACAGGGAAA ACAACGCCCT AATTATCCAA GCCACGAAAG AGGACACTCA GCGCATTCTT
CACGTTCTCA ATCATTTGGA ACGCCCCAGA AAACAAATCC ATATTGAAGC CAGTATCGTA
GAGGCCACCC AAAATACCGC TCGAGAATTA GGCATGCGCT GGAGAGGAAG GTATGTGACG
TCAGGAAGGG GAATTGAAGA TGTGGGCATC ATAGGCGATG CACAAGAACC CGAGGACTGG
GGATCTGCTA TCACCACCCT TCCAGGTAGC GGAACGGATA CACTCGGTGG TTTAAAATTA
GGGACAGTCG TCGGAGAAAT TGCCGGAAAC GTATTATTTT CTCAGCTTCA AGCTTTGGAA
AAAGAGGGAC AAGTCAATAT CTTGGCTAGT CCATCCCTGA CCACTATGGA TAATCAAAGC
GCCTCAACCC AGCACGGAGA GAGAGTGCCT TACGAAACCA CTGATGAAGA TGGTGATCGT
GTCGTTAAAT TTGAGGATGT GGCAATGGGC CTAAAAGTTC ACCCCAGAAT AATTGAAGGG
GATTTGATGG CTATGGACAT TGTTGTCACC AAAGACGAAG TGGATTTTTC CCAGAATGTC
CAAGGCAATC CCTTGATCCG AACCAAAGAG ACGGAAACCA ACCTCTTGGT CCGCAACGGC
GAAACCATCG TCATATCAGG CTTATCAAAG CAAACCGTCA GTGGCACTGA ACATGGAGTC
CCTGGGCTCA GAAAAGTGCC TGGTCTGAGT TGGCTATTCA AGGGTATAGA TAAAAGTGAA
GATATGGAGG AGTTCATGGT TTTCATCACT CCCACCATTT TGGATCAACC AGGATCATGA
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| Protein sequence | MLRSTTICIA IFTILLLSGC ATTDQEKAPE FIDKWQKLAE KSKGHSPVPQ EANTHEPDTF
TSLERHQQEK HKLPREKVSL KFRDNKIQVI LRTLASAASQ NIVMSNNISG TMSLDVKDIP
WSQAFLSVIT TNGLTYSWQG DIIQVQSPKD MQMEKELQQI QKETQILQTT VVDIDYAHIV
DKGVKSGNTN DNGNLDQLEK TLREVLKNAS GGSKEGTLFV DRENNALIIQ ATKEDTQRIL
HVLNHLERPR KQIHIEASIV EATQNTAREL GMRWRGRYVT SGRGIEDVGI IGDAQEPEDW
GSAITTLPGS GTDTLGGLKL GTVVGEIAGN VLFSQLQALE KEGQVNILAS PSLTTMDNQS
ASTQHGERVP YETTDEDGDR VVKFEDVAMG LKVHPRIIEG DLMAMDIVVT KDEVDFSQNV
QGNPLIRTKE TETNLLVRNG ETIVISGLSK QTVSGTEHGV PGLRKVPGLS WLFKGIDKSE
DMEEFMVFIT PTILDQPGS
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